Gene detail

Gene detail information of Glyur000020s00001780

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47780.1	0	ABC2 homolog 6
NR	XP_004499432.1	0	PREDICTED: ABC transporter A family member 7-like isoform X1 [Cicer arietinum]
COG	YP_001212026.1	2.00E-53	ABC-type multidrug transport system, ATPase component [Pelotomaculum thermopropionicum SI]
Swissprot	tr\|Q9STT5\|AB7A_ARATH	0	ABC transporter A family member 7
trEMBL	tr\|A0A072UUA7\|A0A072UUA7_MEDTR	0	ABC transporter A family protein {ECO:0000313\|EMBL:KEH33409.1}

Sequence

Transcript Sequence

>Glyur000020s00001780.1
CGAAAATAAAGGGAACTCGGAGGGATGATTTGGTCACACACTGCAAAACATGTATATAAGCACTACGGAGGGAGAGTTCAAACGTTGAACTTCTTCAACTAGAGTGGGAAGAAAGAAACACACACACACAAACAAAAAGCATGGGGGATGAAAACACACCCAACGAACCCGCCAGCTTCTGGACTCAAGCAAACGCCCTTCTTAGGAAGAATTTAACCTTCCAGAAACGAAATGTGAAGACAAACGTTAAGCTCATCTTGTTCCCGTTCGTGCTGTGTATTTTGCTGTCTCTCATGCAAAGGCTGATTGATAACCAATTCGACAAGGCCAAATACAAGTGTGGCTGCATTTGTACCAACACACAAGGGGATCAGTGTCTGGAGAAGGCGTGTGGGATTCAGTATTCGGATTTTGACCAAGTTGGCGCGTGTCCCATTGCTAACCCTTCTGAATGGCCTCCTCTGTTGCAAGTGCCGGCTCCAGAATACCGCGCTGCGAGAACGGATTTTCTTCCCTCTGACTTTCCAAATCCCTCCTGCAGGACCAATGGCTCGTGTCCGGTCACTTTGCTCTTTACCGGCAATAACCAGTCTCTTGGACAAATTCTGTCGGGGAATATGATCCCAAGTACCTTTAGTATAAATAACTCTGATATTATGGATAGTTTGGCAACAAATGTCTTGGGGTCAGAAACAGAGACAGAGTACACCAATTTTCTGGAACCTGCTTTCACTTCGGATCTTCCCATTTATTATCTACAAAGTCAGTGCACACAGAACTCTACATTCTCCATTTCTGTTCCGATATCAACCGCTAGCAGGGAGCAAGAGGTAAGATGTGCTCAGGGTTTACGTTTATGGCGTAGTAGTTCTTCTGAGGTGAATAATGAGCTATATAAAGGTTATCGGAAAGGTAACACAGAGAGACAGATCAATGAGATCGCTGCAGGTTATGATTTTCTAAATGCAAATGAGAATATATTTAATGTAAGTATATGGTACAACTCAACCTACAGAAATGACACCGGCTTTGATTCTATTGCATTGGCGCGCATTCCTCGGTCTGTAAATCTGGTATCAAATGCCTACCTTCAGTTTCTGCTGGGACCTGGTACCAAAATGTTGTTTGAGTTTGTAAAGGAAATGCCAAAACCTGAGACCCCAACTAAGTTGGATTTGGCTTCTCTTCTGGGTGGTCTCTTCTTTACATGGGTCATCCTGCAACTTTTACCAGTTGTCCTCACATCACTAGTTTATGAGAAGCAACACAAATTGAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCATACTGGATGATTTCGTATGGTTATTTTCTTGCCATATCCATTCTCTACATGCTGTGTTTTGTGATATTTGGCTCAGTCATAGGGTTAAAATTCTTCACAATGAATGACTACAGCATCCAGTTCGTGTTTTATTTCATCTATATAAATTTACAAATTTCACTGGCATTTCTNTTGGCTTCCCTGTTTTCAAATGTAAAGACTGCTACAGTGATTGCATATATAGGTGTATTTGGAACTGGGCTATTAGCTGGTTTTCTTTTCCAATTTTTTGTTCAAGATACATCGTTTCCAAGAGGGTGGATCATTGTTATGGAGTTATATCCTGGGTTTGCTTTATACCGTGGGTTATATGAATTTTCACAATCTTCCTTTAGTGGAGATGCTTTGGGGACTCATGGCATGCGGTGGGGAGATCTGAGTGATAGCACAAATGGCATGAAAGAGGTCTTAGTTATCATATTCGTGGAGTGGCTATTGGTTCTTTTTTTGGCTTATTACATCGATCAAGTTTTGTCATCAGGAAGTTGGAAAAGTCCTCCTTTTTTCTTGAAAGGATTTCAGAAAAAACCTACTTCATCATTTCGGAAGCCTAGTATCCAAAGACAGGGATCTAAAGTGTTTGTTATGATGGAGAAACCTGATGTTAATCAAGAGAGGGAGAAGGTAGAGCAGCTGCTACTTGAACCGACTATTGATCATGCAATTGTGTGTGACAACCTGATAAAAGTTTATCCAGGGAGGGATGGCAATCCAGAGAAATTTGCAGTGAGAGGGTTGTCGCTTGCTTTGCCTCAAGGGGAATGCTTTGGTATGCTTGGTCCCAATGGTGCTGGGAAGACTTCTTTCATCAATATGATGATTGGTCTCACGAAGCCAACCTCAGGTACAGCATTTGTTCAAGGTCTTGACATAAGAACTAATATGGATGGAATATATACTAGCATGGGTGTATGCCCACAGCATGACTTGCTTTGGGAATCCTTGACGGGTAGAGAGCACCTGCTCTTTTATGGCAGACTTAAAAATCTTAAAGGTTCAGCCTTAAAACAAGCAGTGGAAGAATCTTTGAAAAGCGTAAACCTTTTCCATGGAGGAGTTGCTGATAAACAAGCTGGAAAATATAGTGGAGGAATGAAGAGGAGGCTTAGTGTTGCGATTTCACTGATTGGGGATCCTAGAGTTGTTTATATGGATGAGCCAAGTAGTGGATTGGACCCTGCATCAAGAAACAACTTATGGAATGTTGTTAAGCGTGCTAAACAGGATCGTGCAATCATTCTCACCACACATTCCATGGAAGAGGCAGAAGTCCTATGTGATCGATTAGGAATATTTGTAGATGGTAGCTTGCAGTGCATAGGGAATCCAAAGGAGCTGAAAGGCAGATATGGAGGAACTTATGTGTTCACGATGACAACATCTATGGATCATGAAGAGGATGTTGAGAACTTGGTGCAGCAGCTCTCCCCAAATGCTAACAAGATTTACCATATCTCTGGTACCCAGAAGTTTGAGCTGCCAAAAGACGAGGTTAGAATAGCGAATGTATTCCGAGCTGTTGAAACTGCAAAGAGAAACTTCACAGTTTCTGCATGGGGTTTGGCTGACACCACATTGGAAGACGTCTTCATCAAGGTTGCACGTGGGGCTCAGGCATTTGACACCTTGTCATAATTTCATTTCATACACATTATTACAGTACTATTAGTCTGTACAGGTTAAAATATGATTGCCTGTAGAATAACGAGTGTGTATATAGTTACGATATTTTTATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00020	277636	288574	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000020s00001780.1	PF12698.2	ABC2_membrane_3	277	554	7.60E-14
Glyur000020s00001780.1	PF00005.22	ABC_tran	648	792	1.60E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.754
SRR1783600	control	7.755
SRR1783602	moderate drought stress	5.959
SRR1811619	moderate drought stress	5.878

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.612
DRR006520	Root Summer glycyrrhizin high producing strain	1.507
DRR006521	Root Winter glycyrrhizin high producing strain	2.051
DRR006522	Root Winter glycyrrhizin high producing strain	1.948
DRR006523	Root Summer glycyrrhizin low producing strain	3.640
DRR006524	Root Summer glycyrrhizin low producing strain	3.833
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.458
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.475

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.470
SRR2868004	Drought Stress (root)	67.874
SRR2967015	Control (root)	37.709

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.018
SRR9715740	Leaf	4.294
SRR9715741	Leaf	6.478
SRR9715739	Root	5.642
SRR9715742	Root	14.433
SRR9715743	Root	11.904

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.656
SRR8749028	MeJA induced 9h	21.361
SRR8749029	MeJA induced 9h	14.368
SRR8749030	Uninduced	15.506
SRR8749031	Uninduced	10.506
SRR8749032	Uninduced	7.249

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.672
SRR8400027	Control - Root	33.034