Gene detail

Gene detail information of Glyur000020s00001779

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47730.1	0	ATP-binding cassette A2
NR	XP_004499431.1	0	PREDICTED: ABC transporter A family member 2-like [Cicer arietinum]
COG	YP_001212026.1	1.00E-46	ABC-type multidrug transport system, ATPase component [Pelotomaculum thermopropionicum SI]
Swissprot	tr\|Q84K47\|AB2A_ARATH	0	ABC transporter A family member 2
trEMBL	tr\|I1KCQ5\|I1KCQ5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G20360.1}

Sequence

Transcript Sequence

>Glyur000020s00001779.1
ATGGGGGTATACAATTTTAAGATGATGAGCAGCAGCACCCGCGGCGGTTTGGTGCTGGCGTTGCAACAATACAGGGCGCTATTGAAGAAGAACGCGTTGTTATCATGGAGGGGAAAGAGGGCAACCATGCTCCAATTCTTGTCACCACTCATTTTCATCTTCCTCATATTCGCCGTCGACAAAGCAATCAAGGCCCAAACCTCAACCACTTCCGCATACAAGAGCGTAACCGACCCTCCCTCAATTCCCTCTCCCCCAATCCCTCCCTGCGAGGACAAGTTCTTCGTCAAGCTTCCATGCTACGACTTCGTTTGGAGCGGCGATCAGAGCCCAAAGTTTCAGACCATCGTGGGCCGCATCATGGATAACAACCCCGGTAGGCCCATACCGGCCTCCAAGGTCAAGTCCTTCGGTGATAAAGCCCAAGTTGACACGTGGCTTTTCAGTAACCCCATGCATTGCCCCGCCGCGCTTCACTTCGCCCAGAAAAACGACACCGTTATCAGCTATGGGATTCAGACCAACTCCACCAGTGTTGCGAAGCGAGGGAAATANGAAGACCCCACTCTTGCGTTTCAACTCCCTCTTCAGCTCGCTGCTGAACGCGAAATCGCCAGATACCTTATTGGAGACCCAAGCTTCAGCTGGAATGTGTTTCTGAAGGAATTCCCGCACCCGGGAGTGAGTCCTATCTCTGCCGTGAGTACAATTGGTCCAACATTTTTTTTTGCAATTGCCATGTTTAATTTTGTTCTTCAGATTAGCTCTTTGGTGACAGAGAAAGAGCTTAAACTTCGTCAGGCAATGAACGTGATGGGGCTTTACGACTGTGCTTACTGGTTATCCTGGCTCACCTGGGAGGCAGTTGTTACACTCCTATCATCCCTTCTCATAGTTCTCTTTGGAATGATGTTTCAGTTTCGTTTTTTCTTGGATAACAGTTTCGCAGTCCTGTTCTTTTTGTTCTTCCTGTTTGAACTCAATATGACTGGCTTGGCCTTCATGTTATCTGCTTTCATTAGTAAATCATCCTCGGCGACAACAGTGGGCTTCTCCATATTTATTCTTCTGTCAGGAACACTTTACGACCGTAGCATCTCTAGCACTTTCCGAAATATCTGGTCATTGTTCCCGCCTAATCCTTTTTCTCAAGCTCTGACAGTGCTTTCAGATGCAGTTTCAACCCCTGAAGATCACGGTGTTAGCTGGAGTAAACGGGGAAAATGTGCTGTTAATGATGATGACTGTGTGATAACAATTAATGATATTTATATGTGGCTTCTGGCCACGTTCTTTCTGTGGTTTGTTCTGGCCATCTACTTCGACAATATAATCCCAAATGCAATGGGTGTGAGGAAATCTATTCTATACTTCCTAAATCCCAGTTACTGGACGGGAAAAGGAGGACAAAAAGTGAAAGGTGAGGGTGGGGTTTGTAGTTGCTTCGGTTCAGCCCAACATGAAGAGCATGATAGACCAGATGATGAAGATGTCCTTGAAGAAGAAAATGCCGTGAGACAGCAACTAACACAAGGTCTGGTTGATGTGAATGTTTCTGTTCAGATACATGGTCTTGTGAAGACTTATCCTGGTGCATTTAACATTAGTTGCTGCTGTAAATGTAAAAGAAGTACTCCTTACCATGCCGTTAAGGGTTTGTGGGTGAATTTTGCAAAGGATCAATTATTTTGTCTTTTAGGACCCAATGGAGCTGGAAAAACTACAGCCATTAATTGTTTGACAGGGATAACACCAGTTACTGATGGGGATGCATTAATTTATGGACATTCCATCCAAAGCTCCAATGGCATGTCAAACATTCGAAAGCTTATAGGAGTATGTCCCCAGTTTGATATCTTATGGGATGCATTGTCTGGTCAAGAACACCTCCAACTCTTTGCTAGTATTAAAGGCCTGCCCCCAGCTTCCATANAATCAATTACCCAGACATCATTGGCAGAAGTGAGACTCATGGATGCAGCCAAAGTAAGAGCTGGTAGTTACAGTGGAGGAATGAAACGTCGTCTCAGTGTTGCAATTGCCCTTATTGGTAACCCTAAATTAGTCATTTTGGATGAACCGACTACTGGTATGGATCCAATAACAAGGAGGCATGTGTGGGACATAATTGAAAATGCAAAAAGAGGGCGTGCCATTGTTCTCACAACACATTCTATGGAAGAAGCTGACATTCTAAGTGACCGCATAGGAATCATGGCAAAGGGAAGGCTCCGCTGCATTGGCACCTCAATCAGATTGAAGTCACGCTTTGGTACTGGTTTTGTGGCTAATATCAGCTTTTATGGAAACAATGTTGAACACGGTCCTGCAAATGGAGATACAATATCAACAGAACATCGTGAGGCTGTGAAGCAATTCTTTAAGAATCATTTAGATGTAGAACCAAAAGAGGAGAACAATAACTTCATAACTTTTGTGATTCCTCATGACAGGGAGGCGCTCTTGACGAATTTTTTTTCGGAGCTCCAAGATAGAGAAGAAGAATTTGGCATATCTGACATCCAGCTTGGTCTAACAACTCTTGAAGAAGTTTTCTTGAATATAGCAAGGCAAGCAGAGCTAGAAAGTGCTGCAGCTGAAGGGAGCCTTGTGACTCTGACCTTAACATCTGGAGAGTCTGTGCAGATTCCTGTTGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCTGAAAACCCCACAGGGTTTATGGTAGAAGTATATTGGGAGCAAGATGATACTGGTACCCTATGTGTATCTGGTCACTCACAGAAAGTTCCAATTCCTCAAAGTGTTCAGCTATCCTCGTCTCCTTCTGCAAGACACCGAAGAAATCTAAGCCGGTCAGGATCAGTTCATGGGTTTGTGATTGATCCCAGTCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00020	265947	272091	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000020s00001779.1	PF12698.2	ABC2_membrane_3	42	440	1.30E-21
Glyur000020s00001779.1	PF00005.22	ABC_tran	553	695	8.90E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.552
SRR1783600	control	29.599
SRR1783602	moderate drought stress	26.881
SRR1811619	moderate drought stress	26.434

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.742
DRR006520	Root Summer glycyrrhizin high producing strain	19.498
DRR006521	Root Winter glycyrrhizin high producing strain	19.288
DRR006522	Root Winter glycyrrhizin high producing strain	18.788
DRR006523	Root Summer glycyrrhizin low producing strain	24.322
DRR006524	Root Summer glycyrrhizin low producing strain	24.326
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.191
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.100

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	68.295
SRR2868004	Drought Stress (root)	137.605
SRR2967015	Control (root)	74.794

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.254
SRR9715740	Leaf	27.809
SRR9715741	Leaf	24.424
SRR9715739	Root	9.759
SRR9715742	Root	35.943
SRR9715743	Root	31.860

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.597
SRR8749028	MeJA induced 9h	54.715
SRR8749029	MeJA induced 9h	28.922
SRR8749030	Uninduced	50.467
SRR8749031	Uninduced	55.473
SRR8749032	Uninduced	30.913

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	86.793
SRR8400027	Control - Root	77.842