Gene detail information of Glyur000020s00001778 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G74690.1 | 2.00E-99 | IQ-domain 31 |
| NR | XP_003527063.1 | 0 | PREDICTED: protein IQ-DOMAIN 31-like isoform X1 [Glycine max] |
| Swissprot | tr|Q8L4D8|IQD31_ARATH | 6.00E-118 | Protein IQ-DOMAIN 31 |
| trEMBL | tr|K7KVW9|K7KVW9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G20341.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00020 | 260885 | 265011 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000020s00001778.1 | PF00612.22 | IQ | 120 | 139 | 1.50E-05 |
| Glyur000020s00001778.1 | PF00612.22 | IQ | 142 | 159 | 0.0026 |
| Glyur000020s00001778.1 | PF13178.1 | DUF4005 | 478 | 582 | 5.90E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.330 |
| SRR1783600 | control | 19.711 |
| SRR1783602 | moderate drought stress | 17.574 |
| SRR1811619 | moderate drought stress | 17.544 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 37.235 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 36.286 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.533 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.516 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.464 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.541 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 40.148 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 40.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 79.452 |
| SRR2868004 | Drought Stress (root) | 74.588 |
| SRR2967015 | Control (root) | 85.381 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 42.775 |
| SRR9715740 | Leaf | 44.323 |
| SRR9715741 | Leaf | 27.978 |
| SRR9715739 | Root | 3.608 |
| SRR9715742 | Root | 33.167 |
| SRR9715743 | Root | 26.152 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.885 |
| SRR8749028 | MeJA induced 9h | 22.526 |
| SRR8749029 | MeJA induced 9h | 10.022 |
| SRR8749030 | Uninduced | 14.847 |
| SRR8749031 | Uninduced | 4.019 |
| SRR8749032 | Uninduced | 3.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 60.337 |
| SRR8400027 | Control - Root | 72.581 |