Gene detail

Gene detail information of Glyur000020s00001768

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G74790.1	0	catalytics
NR	KHN16273.1	0	HIPL1 protein [Glycine soja]
COG	YP_005846258.1	1.00E-56	glucose/sorbosone dehydrogenase [Ignavibacterium album JCM 16511]
Swissprot	tr\|Q9SSG3\|HIPL1_ARATH	0	HIPL1 protein (Precursor)
trEMBL	tr\|I1JX03\|I1JX03_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G34600.1}

Sequence

Transcript Sequence

>Glyur000020s00001768.1
ATCCCTTCTGAACTTGAGACTCCCCTGAAGTTCTGTCCTTGCGATGAAAAGGCTTGTTGTGATGATGATACTGAAGAAGCAAGGTTGCAGATACAATTCCAGGAGTTAAACGTCACTGACNCAAAATGTGCTTCTCTTCTCAAGTCCATTTTATGCGCTATAAGTGATGAACAGTTTTCTGCTAAATTGTTCCAAATTGCCACAGGCATTGGAACTGTTCCCATTTTTTGCAACAACACATTATCAGTGACGTCACAACAATCCAATGGTGGTTGTTCTCTAGATTTATGCACAAAGGCATGGGAAACATGTGGAAATGTTTCAATTGTTAATTCCCCGTTTGAATCTTTCTTGCAATACAAAGCTGGCAACGACCTTGGCTTCTTAACTTCCAGAGTGAGGGATGTTTGGCAGTCCAGGAGAAGCTTTTGTGAGACTTTTGGTGTCGCTTCAAAAGATGGAGAAGGATGCTTTTATGGTGAACCAATTTCATTGAACAACGAACAAGCTTCCCATCTTCCCAAGGGTCTATGTTTGGAGAAAATTGGGGATGGGTCTTACATTGACATGGCACCACATCCTGATGGTTCCAACCGCGCCTTCTTTGCAAACATGCAAGGCAAGATCTGGTTGGCTAAGATTCCTTTCGAGGGATCAAATGAGATTTTGGAAATCGATGAATCCAAGACCTTCGTTGACATTAGTGACAATGTTTTGTTTGATTCTGGGCATGGTTTAATGAGTGTTGCATTTCATCCAAACTTTTCACAAAATGGCCGCTTCTTTCTCTCTTATAATTGTGATCAGATGAAAAGTCCTACATGTTCTGGTAGGTGTGCTTGTAACTCAGATGTGAATTGTGACCCTTCAAAAGTAGGTCCTGATCATGGTATCCTCCCATGCCAATATCACTGTGTAGTAGCAGAATATACAGTCAATGGCACATCATCAAAGCCTTCTTTGGCAGAAAGTGCCAATCCATCAGAAGTGAGAAGAATATTCACAATTGGTGTTCCGTACGATGGAGGTCATGCTGGTCAGATTCTCTTTGGACCTGCAGATGGATACTTGTACCTCATGTTGTCAGATGGCTCTAATCGTGACGATCCTTACAACTTTGCCCAGAACAAGAGATCCTTACTGGGAAAGATTTTGAGAATTGATGTAGACAGGATACCCAGTACCAAAGAAATAAATGACAAGGACTTGTGGGGAAATTATTCTATACCAAGAGATAATCCATATGTTAATGATAAGGAGCTTGAGCCAGAGATATGGGCTATTGGTATCAAGAATGCTTGGCGCTGTAGTTTTGACTCAGAGAGACCATCCTATTTTCTCTGTGGAGATGCTGGACAGGATCAATATGAAGAGATTGATGTGATTAAAAAGGGTAAAAACTATGGTTGGAGAGTGTATGAGGGTCCTTATCTTTTCCATCCATCAGAGTCTCCCGGAGGAAATACTTCTGCCAGTTCCATACACCCAATCTTCCCTGTAATGGGTTACAGCCATTCTGAGAATGACGAGGAATCAGGCTCTGCATCCATAACTGGATCGGCTCTGGTGGGTACAGAGAGTCCTAAAAGCAGTGGGAACTTCACAAGTGCCAAGATTTCTTCTAGCTGCGCTCGTGACTCCCCAATGGCATGTTCTTTTGTGAAGCAGGGAAGTGCCACTCCTTCACTGGGGTATGTCTACTCGTTAGCAGAAGATAACAAGAAGGACATTTATTATCTGACAAGCACTGGTGTTCACAGAAGGACTTTGGGTTTCAACTGGCTTGGTGAGATGAAGGGCGTTCTTTCCATCAGCTTCTTCGTTTGTTCCCTGCTTCTGCTTTTGGATTCTTCAACTTCACTTCCTCTATGCGTTGATTCCAGGGCACCCTTTACCCTGAATACGACACTCGCATTTTGTCCTTATAACGGAAGCACGTGTTGCAACTCCACAGAAGATGCACAAATAGAGAAGCAATTCCGAACGAGGAACGTATCTGATCCTTCCTGTGCCTCGGTTTTGAAATCAATACTTTGTGCGAGGTGTGACCCATTTTCAGCAGAGCTGTTTACAGTTCAATCCTCACCCAGAACAGTTCCGGTGCTTTGCAATTCCACTATATCAGCAAACTCTTCCCAGTCAAAGGCACCAGTAGTAGAGGACTTCTGCTCTCAAGTATGGAACACATGTCAAAATGTATCCATAGTGAATTCTCCATTTGCCCCTTCATTACAAGGCCAAGCAGGAGCACCAGTTGATGCCAATGCTACCAAACTGACCGAGTTGTGGCAGTCCAAAACTGACTTTTGCACTGCATTTGGTGGAGCATCTGATAATTCATCAGTATGCTTTGAGGGGGAACCTGTTTCAGTAAACAAATCTGAGACCCCTATTGTCCCCCCTCGTGGCTTGTGCCTTGAGAAAATTGGTAATGGATCTTACCTTAATATGGTGGCTCATCCTGATGGCTCCAACCGTGCGTTCTTCTCTAATCAAATGGGTAAGATTTGGCTGGCAAAACTTCCGGATCAGGGATCAGGAGGTACAATGGAGTTCGATGAATCAAGTCCCTTTGTTGACCTGACTGATCAAGTTTATTTTGATACTAAATTTGGAATGATGGGCATGGCATTTCATCCGAATTTTGCGAAAAATGGGCGATTCTTTGCTTCATTCAACTGTGATAAATCCAAGTGGTCAGGATGTACTGGAAGATGTGCCTGTAATTCAGATGTTAATTGTGATCCATCAAAGATAGGTACAGATCAAGGTGCCCAACCATGCCAATATCAAACTGTTATTGCAGAGTACACGGCTAATGGCACCGCATCTCAGCCTTCCTCGGCTGAAAGTGCTAAACCAACTGAGGTGAGAAGAATCTTTACCATGGGCCTCCCATTTACATCTCAACATGGAGGTCAGATACTCTTTGGACCTGATGATGGAAATTTATATTTCATGATGGGAGATGGAGGAGGTTCAGGTGATCCATACAATTTTGCACAAAACAAAAAATCCTTGCTTGGAAAGATCATGAGGCTTGATATTGAGAACATCCCAAGTGCTGCAGAAATTAGCAAACTTGGGCTTTGGGGTAACTACTCCATTCCAGAGGACAATCCATATAGGGAAGATAAAGATATGCAGCCTGAAATATGGGCCTTGGGACTAAGAAATCCTTGGCGCTGCAGTTTTGATGCAGAAAAACCTTCCTATTTTGTGTGTGCGGACGTTGGACAGGATCTTTACGAGGAGGTGGATCTGATCACAAAGGGAGGAAACTATGGCTGGCGTGTTTATGAGGGTCCCTATCCATTCAACCCTACACAGTCACCTGGAGGCAATACTTCCCATACATCCATAAACCCAATTTTCCCAATACTGGGTTACAACCATTCCGATGTAAACAAGAATGAAGGATCAGCATCCATCACTGGTGGATATGTCTATCGCTCTAGCACTGATCCTTGCACATATGGAAGGTACTTGTATGGAGATCTGTATGCGGGTGCAATATGGGCAGCAACCGAAGACCCAGCAAATAGTGGAAATTTCAGTACTAGCAAAATTCCCTTCGGTTGTGCACATGATTCCCCTGTNAAATGCGACTCTGTACCTGGGACCTCTCTTCCAGCTTTAGGATACATCTTCTCATTTGGCGAAGACAACAATAAAGACATTNATATCCTTGCAAGCACTGGGGTTTACAGAGTTGTTCGCCCAAGTCGCTGCAGTTATGAATGCTCACTGGAAAAGGCAACAACTACTACTAACACAAGCCAAGCTCCTTCTCCTTCTTCTCCATCTCATGCTAGCCGCTTGAGTAACTTTTCTGGATATCTGTTTTTGCAGTTTTCATCTTTGTTGCTACTTTTTTTGGGTTTCATGTAGTATTTGCTATGATCTTTGTACATTATGTAATGTGTAAAGACGAGGTTGCGGCATGCGATTACTTTAAAATCATCAACAAATTTAACTTACGCGATTACAGAGATCACAAGATGTTTATTTCACCTTTTCTTTTTCTTACTTCTCTCTTTTTCATTTTTCATTTCTTTTATTTTGAGAAAATTCAAAATTCCATTTGAATTACATTCTCCTTGTATGAGAAGTAAATATATGCTACAATTTAGTCTAGACTAGAGAATGATCAAGAGGACTTGTTTTCTATAACTTGTTTGCTTGAAGCTCCTTCAACTTTCAAGCAAGCTAGAAAACATTGAATTGCTCATCACTTGCTACTTAAATATTTTACACTGAAAACTGAAATGAAAGAGCCCATAACAATTCACAGTATCACTCATTTCCCGTTCTCTCCCCCAATTCTATAAACTAAAAATGGACGAGAATAAAAATTCCAAAAAATTAATCAGCCTCTTGCAATCCGCCGAGCACAACAGACCCGACGAACAAACCGACAGCCCCAACGCCAAGAGCGGCGGCGACGACGGCCTGAACGACAACGAGCGCGGCGGAATCGTCGGGAATGAGAACGATCGCCGCGATGGCAGCGACAAGCGCGGGGAGCGCGGCGGAGGCCAAGACGGAGGGGGAAAAGCCGGCGACCTTCTCCAAGAGGCTGAGCAAGCCAAGCTCCTCTGCCTTAGAGAAGACGCCGAGCTTCTCAATGGAAGAGAGCGTGAGGCCTAACTCCTCTGCCTTCGACAGCAACCCCGCTCTCTCCACGTTGCTCAGCACTTTTCTCTTCTCAAGCTTCTTGAACACGTCCACTTCCACTTCCTCGCTCCCCTCGTAGAAGATTCCAGCCCCGAACCACTCTTTCTTCCAGTTCTCGTTGTACTTGTTCACCTTGCAGTTCCAAATCCACACCCAACGCCAGTTAGTTGAACTAACTAAGACGTTTTCGCAATTTCGAATTATTAATTAAAAAGTTTTAAAAATGAAAACGGTGGCGTTTTTGTACCTTTTTTTGGGGAGCCATGGCGACGACGGTTAGAGGTTTGTTGGAGGGAGTTGGGAATGAGCGTTGGTAACGGAATGGGGAGGAGAAGGTGGTGCGGTTGGTGTGGATGCATCGAAGGCCTGTAGCTGAGGATGGTGCAGGGATCGCCATGGATGATGGTTTGGTTGGTTAGAGCTTCCCCTACTTCTCAATGGTATCTCAACTGCCACGTGGGACGATGAAGAGA

Protein Sequence

>Glyur000020s00001768.1
IPSELETPLKFCPCDEKACCDDDTEEARLQIQFQELNVTDXKCASLLKSILCAISDEQFSAKLFQIATGIGTVPIFCNNTLSVTSQQSNGGCSLDLCTKAWETCGNVSIVNSPFESFLQYKAGNDLGFLTSRVRDVWQSRRSFCETFGVASKDGEGCFYGEPISLNNEQASHLPKGLCLEKIGDGSYIDMAPHPDGSNRAFFANMQGKIWLAKIPFEGSNEILEIDESKTFVDISDNVLFDSGHGLMSVAFHPNFSQNGRFFLSYNCDQMKSPTCSGRCACNSDVNCDPSKVGPDHGILPCQYHCVVAEYTVNGTSSKPSLAESANPSEVRRIFTIGVPYDGGHAGQILFGPADGYLYLMLSDGSNRDDPYNFAQNKRSLLGKILRIDVDRIPSTKEINDKDLWGNYSIPRDNPYVNDKELEPEIWAIGIKNAWRCSFDSERPSYFLCGDAGQDQYEEIDVIKKGKNYGWRVYEGPYLFHPSESPGGNTSASSIHPIFPVMGYSHSENDEESGSASITGSALVGTESPKSSGNFTSAKISSSCARDSPMACSFVKQGSATPSLGYVYSLAEDNKKDIYYLTSTGVHRRTLGFNWLGEMKGVLSISFFVCSLLLLLDSSTSLPLCVDSRAPFTLNTTLAFCPYNGSTCCNSTEDAQIEKQFRTRNVSDPSCASVLKSILCARCDPFSAELFTVQSSPRTVPVLCNSTISANSSQSKAPVVEDFCSQVWNTCQNVSIVNSPFAPSLQGQAGAPVDANATKLTELWQSKTDFCTAFGGASDNSSVCFEGEPVSVNKSETPIVPPRGLCLEKIGNGSYLNMVAHPDGSNRAFFSNQMGKIWLAKLPDQGSGGTMEFDESSPFVDLTDQVYFDTKFGMMGMAFHPNFAKNGRFFASFNCDKSKWSGCTGRCACNSDVNCDPSKIGTDQGAQPCQYQTVIAEYTANGTASQPSSAESAKPTEVRRIFTMGLPFTSQHGGQILFGPDDGNLYFMMGDGGGSGDPYNFAQNKKSLLGKIMRLDIENIPSAAEISKLGLWGNYSIPEDNPYREDKDMQPEIWALGLRNPWRCSFDAEKPSYFVCADVGQDLYEEVDLITKGGNYGWRVYEGPYPFNPTQSPGGNTSHTSINPIFPILGYNHSDVNKNEGSASITGGYVYRSSTDPCTYGRYLYGDLYAGAIWAATEDPANSGNFSTSKIPFGCAHDSPVKCDSVPGTSLPALGYIFSFGEDNNKDIXILASTGVYRVVRPSRCSYECSLEKATTTTNTSQAPSPSSPSHASRLSNFSGYLFLQFSSLLLLFLGFM

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00020	218279	229110	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor

GO:0048038 quinone binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000020s00001768.1	PF07995.6	GSDH	190	475	4.50E-21
Glyur000020s00001768.1	PF07995.6	GSDH	817	1104	3.20E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.029
SRR1783600	control	4.185
SRR1783602	moderate drought stress	5.766
SRR1811619	moderate drought stress	5.739

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.867
DRR006520	Root Summer glycyrrhizin high producing strain	4.900
DRR006521	Root Winter glycyrrhizin high producing strain	9.291
DRR006522	Root Winter glycyrrhizin high producing strain	9.136
DRR006523	Root Summer glycyrrhizin low producing strain	9.920
DRR006524	Root Summer glycyrrhizin low producing strain	9.838
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.042
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.026

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.911
SRR2868004	Drought Stress (root)	46.264
SRR2967015	Control (root)	42.420

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.327
SRR9715740	Leaf	28.674
SRR9715741	Leaf	22.019
SRR9715739	Root	8.567
SRR9715742	Root	8.185
SRR9715743	Root	9.437

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.036
SRR8749028	MeJA induced 9h	60.652
SRR8749029	MeJA induced 9h	30.459
SRR8749030	Uninduced	29.113
SRR8749031	Uninduced	29.848
SRR8749032	Uninduced	26.603

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.365
SRR8400027	Control - Root	21.132