Gene detail

Gene detail information of Glyur000020s00001763

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G18900.2	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_003523047.2	PREDICTED: pentatricopeptide repeat-containing protein At1g18900-like isoform X1 [Glycine max]
Swissprot	tr\|Q8GYP6\|PPR49_ARATH	Pentatricopeptide repeat-containing protein At1g18900
trEMBL	tr\|I1JWZ7\|I1JWZ7_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G34450.1}

Sequence

Transcript Sequence

>Glyur000020s00001763.1
TAAAATTTCATTCGAAAAAAATAAAAAATAAAATGGAGAGAGAGAGAGGTAAGTGATCTCAGGGCATACCTCACACATTGTTGGAAAAATCCTCGCACCTTTGACGCCACACTGAAACGAGCCGCCACCTTCCCCTCCCTTCCATGGTTCCACAAAACAACTGAACGATGCAGAATATGTTACGAGCAAAGCAGATCGGTGCCCTTTCGAGCAGTGCTAGGAGCTTTTTCCTTAGTGGTTCACGATGTAATGCAGCAGATGGCAATTCATGCACTTGTGCTGAGGATGAAACATGTGTGTCAAGAAGACAACAGAGGAAGAATGAAGATTTACTTTTGCAAAAGCCATCCTCTTTGGTATCCAAAAATACATCTCAAGTAGAAGGAACCCTAAGAAAGTCGGCAAACAGGCCAGGTTCTCACAAGGCTCTGGGTGTTGATCAATCTGGTCGTGCACAAGTCAGGTCTACTTCAAGTCCATCAAGTAAATCAGACTCTGTAACATATGCTTGTGTTGTTGATGGTGTTCAGGACCATGTTACACACTCATCTCCTCTCGATGCTGACCAGTTTTATAGGGCCGGTATTGCAGCTGTCAATTTTCTTTCTGATTTAGTTAATCGTAAGCTTCCTTCATCAGATGGAATGGGAATACTAAGCTACTCTAAAAATTGTGTGGTTGATCCCGCCAGAACCCTGCCCAACATCAGATCTTCCAATGTGAAACAAATTAGAAAGGAGAACTTTACCAGTGTTCATCCCAAACCACCTNTTTCTACTCATGCAGGGCCATCAAATCATACAAGCAATTATCACGGTGCAAAGGGGAAAGGTGATAAATCAAATTTAGGTAAAGGCTTTAAGCATGTTGCTTCTTCAGGGACAGAGAAGTCAGAGNTGGCTCCAAATATTCCTTTAAATAATCATGACCGAAGACCCTTGCCACAGAGAACAAGAACTCATTCAAATCGATTTGTGACAAATTTTGGTTCCAATGTGCAAACTTCAAATTCACAGATGTTGGGCTCATTCAAGGAAAGTTTCAATAAACACCCCAGGGATCTGAAAACGTCAGCAGGAATTGCTCCAACAANCAGGCAATTTACAAACACAGGCCGTGTTGTGGAAGTGGTTAAAGATACACTGCAACATTTAAAGTGGGGTCCTGCTACAGAGAAGGCTCTTTATAACCTGAATTTTTCAATAGATGCATATCAAGCTAACCAAATCCTAAAGCAACTTCAAGACCATTCAGTTGCTCTAAGGTTCTTTTACTGGTTAAAACAACAACCAGGCTTCCGGCATGATGGGCATACTTACACCACCATGGTTGGTCTCCTGGGACGTGCAAGAGAGTTTGGTGCGATAAACAAATTGTTAGAGCAGATGGTCAAGGATGGATGCCAGCCCAATGTTGTAACTTATAATCGCCTAATTCACAGCTATGGCCGTGCAAACTACCTAAGGGAAGCACTGAATGTCTTCAATCAAATGCAGGAGGAGGGGTGTGAGCCTGATCGTGTCACTTACTGCACACTCATTGATATCCATGCAAAAGCTGGGTTTCTTGATGTAGCCATGGCTATGTATGAAAGAATGCAAGAAGTTGGCCTTTCCCCTGACACATTTACTTACAGTGTAATGATCAACTGTCTAGGAAAATCTGGTAATTTAGCTGCTGCCCACAGGCTATTTTGTGAGATGGTTGATCAGGGTTGTGTCCCGAATATTGTCACCTACAACATCATGATTGCTTTGCAGGCTAAAGCAAGGAACTATCAGACAGCATTGAAACTATACCGCGACATGCAGAATGCAGGGTTTAAACCTGACAAAGTCACATATAGCATTGTAATGGAGGTGCTTGGTCACTGTGGGTATCTTGAGGAAGCAGAAGCAGTCTTTGTTGAGATGAAGCAGAAAAATTGGATTCCAGATGAACCTGTTTATGGTCTTCTGGTAGACCTGTGGGGAAAGGCTGGTAATGTTGAGAAGGCTTGGGAATGGTATCATGCAATGCTCAGTGCAGGTTTGCTTCCAAATGTACCAACCTGCAATTCCCTTCTCAGTGCATTTCTCAGGGTGCATCGGTTGCCAGATGCATATAATCTTCTCCAAAGCATGGTAGCTCTTGGCCTAAGGCCTTCTTTGCAGACTTATACTTTGCTTCTCAGCTGTTGTACAGAGGCACAATCACCATATGACATGGGATTTTGTTGTGAGCTCATGGCAGTTACTGGCCATCCTGCCCATGCATTTTTACTGTCAATGCCAGCGGCAGGACCTGATGGTCAAAATGTGCGTGATCACGTAAGCAGATTCTTGGACCTGATGCATTCTGAGGATAGGGAGGGGAAAAGAGGGCTTGTAGATGCAGTGGTGGATTTCCTCCACAAATCTGGGCTCAAAGAGGAGGCTGGTTCGGTATGGGAGGTGGCTGCCCAGAGAAATGTGTATCCAGACGCCGTGAAGGAGAAAAGTTCATGTTATTGGCTCATAAATCTTCATGTCATGTCTGATGGAACTGCTGTAACAGCATTGTCTAGGACACTTGCTTGGTTTCGCAGACAGATGCTGATATCTGGGGTTGGCCCGAGCCGAATAGATATCATTACTGGATGGGGTCGAAGGAGCAGGGTGACAGGTTCTTCTCTTGTGAAACAGGCAGTGCATGAACTGCTGCATATGTTCAGTTTCCCTTTTTTCACTGAAAATGGCAATTCGGGTTGTTTTGTGGGATGTGGGGAGCCTCTTAATCAATGGTTGCTCCACTCTTACGTGGAACGAATGCATTTGCTGTAGTTAAGTTGGTTATTGTAGAATCATTAGCCCTTTCAGCTTAGACACAATTTTGCTGAGGGATATGAGCTTTGAGTGGAATGTTTTGCACAATGCTGATATTGTATTTAAATCTTTAGATTGTCACAGTGCGTAGTTATCTAATTTATTATTATTCTGCAAAGTGTATTTAACTATTTATTTTTGTAATGGTAAACTGAGTGATTGATGTTAGTGTTCGCTCTCCTCATGTTATTCAATTTTGCATTTTTTGCAAAATATAGGAAAATCTTTAGTCTTGAGTGAATGTGACCCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00020	196047	200293	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000020s00001763.1	PF01535.15	PPR	383	412	0.028
Glyur000020s00001763.1	PF13041.1	PPR_2	414	459	1.00E-16
Glyur000020s00001763.1	PF12854.2	PPR_1	481	513	1.60E-08
Glyur000020s00001763.1	PF13041.1	PPR_2	519	566	1.30E-14
Glyur000020s00001763.1	PF01535.15	PPR	593	622	0.0029
Glyur000020s00001763.1	PF13041.1	PPR_2	624	671	4.20E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.202
SRR1783600	control	11.294
SRR1783602	moderate drought stress	8.913
SRR1811619	moderate drought stress	9.039

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.583
DRR006520	Root Summer glycyrrhizin high producing strain	16.514
DRR006521	Root Winter glycyrrhizin high producing strain	2.665
DRR006522	Root Winter glycyrrhizin high producing strain	2.601
DRR006523	Root Summer glycyrrhizin low producing strain	18.786
DRR006524	Root Summer glycyrrhizin low producing strain	18.686
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.586
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.534

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.846
SRR2868004	Drought Stress (root)	24.324
SRR2967015	Control (root)	20.693

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	37.639
SRR9715740	Leaf	31.714
SRR9715741	Leaf	46.008
SRR9715739	Root	13.558
SRR9715742	Root	32.816
SRR9715743	Root	28.464

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.798
SRR8749028	MeJA induced 9h	34.523
SRR8749029	MeJA induced 9h	17.765
SRR8749030	Uninduced	8.895
SRR8749031	Uninduced	10.371
SRR8749032	Uninduced	6.110

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.391
SRR8400027	Control - Root	21.816