Gene detail

Gene detail information of Glyur000020s00001759

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G62670.1	0	H(+)-ATPase 11
NR	XP_002322127.1	0	putative plasma membrane H+ ATPase family protein [Populus trichocarpa]
COG	YP_006722443.1	5.00E-176	cation-translocating P-type ATPase [Geobacter metallireducens GS-15]
Swissprot	tr\|Q9LV11\|PMA11_ARATH	0	ATPase 11, plasma membrane-type
trEMBL	tr\|B9IEG7\|B9IEG7_POPTR	0	Putative plasma membrane H+ ATPase family protein {ECO:0000313\|EMBL:EEF06254.1}

Sequence

Transcript Sequence

>Glyur000020s00001759.1
CAGAGCGAAGTTATGGTTGAGACTTTATGAGTTTTGAGAGAAAGTTGGGAGAGTTAGAGAAAGTGGTCGACCATGGGTGACAAGTCCCAAGAATTGGAAGCTGTGTTGAAGGAAACTGTGGATTTGGAGAACATACCCATTGAGGAGGTTTTTGAGAATCTGAGATGTAGTAGAGAAGGTCTCACCAGTGAGGCTGCTGAGGAGAGGCTGGTCATTTTTGGTCACAACAAGCTTGAAGAGAAAAAGGAGAGCAAATTTTTGAAGTTCTTGGGGTTTATGTGGAATCCTCTATCCTGGGTTATGGAGGCTGCTGCTATAATGGCAATTGCACTTGCCAATGGAGGGGGGAAGCCCCCTGATTGGCAAGATTTTGTGGGTATCATCACGTTGCTTATCATCAATTCAACTATCAGTTTCATTGAGGAGAACAATGCTGGTAATGCTGCAGCAGCTCTCATGGCCCGTCTTGCTCCAAAAGCAAAGGTTCTTCGAGATGGGAGGTGGAATGAGCAAGATGCCGCGGTCCTGGTTCCCGGTGACATAGTTAGCATTAAACTTGGAGATATTATACCAGCTGATGCTCGTCTTCTTGAAGGGGATCCTTTGAAAATTGATCAGTCTGCACTTACAGGTGAGTCCCTTCCAGTGACAAAGGGCCCTGGAGATGGTGTGTATTCTGGTTCTACCTGCAAACAAGGAGAGATTGAAGCCGTGGTCATCGCAACTGGCGTTCATACCTTTTTTGGCAAAGCTGCTCACCTTGTAGATACCACTAATCAAGTTGGTCACTTTCAAAAGCCTCCCTTGGCCGCGCGGAGCTCCTCCCTTGGCCGTGCGGGGATGGGGGGCGTGGTGTATCAGGACCGTAAAATGGATGCTGGGTCAAGCTTTTCACAAATTGCTCCTCCTATCTTTGATGGGGAGAACTATGATCTTTGGGCGGCGAGAATGGAGTCCTACTTGGATGCTTTGGATTTGTGGGAAGCTGTTGAAGAGGATTATCAAGTCTTGACTGCAATTGGGAACTTCTGCATATGTTCAATTGCTGTGGGGATGGTTATTGAGATTATTGTTATGTACCCCATTCAAGATCGAGAGTATCGCCCTGGAATCGATAACCTTCTTGTACTTCTTATTGGTGGAATTCCAATTGCCATGCCCACTGTTCTCTCAGTGACTATGGCCATTGGTTCTCATAGACTATCTCAGCAGGGGGCTATCACAAAGAGGATGACAGCTATTGAAGAGATGGCAGGCATGGATGTGCTTTGCAGTGATAAGACTGGGACTTTAACATTGAATAAGCTTACTGTTGACAAAAATCTTATTGAGGTTTTTACAAAAGGAGTGGATCCAGATACTGTTGTATTGATGGCAGCTCGTGCTTCGAGACTTGAGAATCAAGATGCAATAGATTGTGCCATAGTTGGTATGCTGGCTGATCCTAAGGAGGCGCGTGTTGGTATCCAAGAAATACATTTTCTTCCTTTCAATCCTACTGATAAGCGGACAGCATTAACTTATATTGATCATGATGGTAAAATGCATAGAGTTAGCAAAGGTGCACCAGAACAGATCCTTAATCTTGCACACAACAAATCAGACATTGAACGAAGAGTTCATGCAGTGATAGATAAGTTTGCAGAGCGTGGTTTACGATCCCTTGCAGTAGCATACCAGGAAGTTCCAGATGGAAGGAAAGAGAGTGCTGGAGGCCCCTGGCAGTTTATTGGCCTTATGCCTCTGTTTGATCCACCAAGGCATGACAGTGCAGAAACAATACGAAGGGCACTAAACCTTGGAGTAAATGTCAAGATGATTACAGGGGATCAGCTAGCTATAGGAAAGGAAACAGGCCGTCGGTTGGGAATGGGTACCAATATGTATCCTTCATCTGCACTGCTTGGACAGGATAAGGATGAATCCATTTCTGCCTTACCCATTGACGAACTAATAGAAAAAGCTGATGGATTTGCTGGTGTTTTTCCTGAGCACAAGTATGAAATTGTGAAACGCTTACAAGCTAGGAAACATATCTGTGGAATGACTGGCGATGGAGTGAATGATGCGCCTGCACTGAAGAAGGCAGACATTGGTATAGCCGTTGCTGATGCGACTGATGCAGCTCGTAGTGCATCTGATATTGTTTTAACAGAACCTGGCCTTAGTGTTATTATTAGTGCTGTGTTGACCAGCCGAGCTATCTTCCAGAGAATGAAAAATTATACAATTTATGCCGTCTCAATTACAATTCGTATTGTGCTTGGTTTCATGTTGCTGGCTCTCATATGGAAGTTTGACTTTCCGCCTTTTATGGTGCTCATCATCGCCATTCTAAATGATGGCACTATCATGACAATTTCAAAAGATCGGGTAAAACCATCGCCTCTGCCAGATAGCTGGAAGCTAGCTGAGATATTTACTACTGGCATTGTGCTTGGATCTTACTTGGCAATGATGACAGTTATATTTTTCTGGGCAGCATACAAAACAAATTTCTTCCCGCGAGTATTTGGAGTCTCTACTCTTGAGAAAACTGCTCATGATGATATCAGAAAACTAGCTTCTGCAATCTATCTTCAAGTGAGCACTATCAGTCAGGCCCTAATATTCGTGACTCGGTCTCGAGGTTGGTCATATGTTGAACGTCCTGGTATTTTGCTGGTGACAGCTTTTGTGGTTGCTCAGCTGATTGCCACTTTGATCGCCGTATATGCGAACTGGAGCTTCGCTGCCATTGAAGGCATAGGTTGGGGATGGGCTGGTGTAATATGGTTATATAACATAATATTCTACATCCCTCTTGATGTCATTAAGTTTTTAATTCGATATGCTTTGAGTGGGAAGGCTTGGGAGCTTGTCATTGAGCAAAGGATTGCATTCACAAGGCAAAAGGACTTTGGGAAGGAACAACGGGAACTTCAATGGGCACATGCACAAAGAACATTGCATGGATTACAACCACCTGACACCAAGATGTTCCCTGAGCGTACACATTTCAATGAACTCAATCAAATGGCTGAAGAAGCTAAAAGGAGAGCCGAAATAGCAAGGTTGAGAGAACTGCATACATTAAAAGGTCATGTAGAATCGGTTTTGAAATTGAAGGGGATTGATGTAGACACAATTCAGCAAGCATACACAGTGTGAAGATGCTTANATATTTTGCATACTGATACTGTAAAGGGGGCACAATCTAATGGTGAGGACTGCTGAGAGGAATGGAATNGAATGTGATGATTACACTCGAGTTCAATGTACTGTTTTGATGAGCTCCTAAAGGGAGTGCTTTTTTAAAGCTCTATCTATGCATCTTATTTTCTGTTCTCACTCTATCTGTTACTTATTCTCCACGATTTCATAATGCAACGGGGAGGTGT

Protein Sequence

>Glyur000020s00001759.1
MGDKSQELEAVLKETVDLENIPIEEVFENLRCSREGLTSEAAEERLVIFGHNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLIINSTISFIEENNAGNAAAALMARLAPKAKVLRDGRWNEQDAAVLVPGDIVSIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKPPLAARSSSLGRAGMGGVVYQDRKMDAGSSFSQIAPPIFDGENYDLWAARMESYLDALDLWEAVEEDYQVLTAIGNFCICSIAVGMVIEIIVMYPIQDREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFTKGVDPDTVVLMAARASRLENQDAIDCAIVGMLADPKEARVGIQEIHFLPFNPTDKRTALTYIDHDGKMHRVSKGAPEQILNLAHNKSDIERRVHAVIDKFAERGLRSLAVAYQEVPDGRKESAGGPWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESISALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTNFFPRVFGVSTLEKTAHDDIRKLASAIYLQVSTISQALIFVTRSRGWSYVERPGILLVTAFVVAQLIATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDVIKFLIRYALSGKAWELVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFPERTHFNELNQMAEEAKRRAEIARLRELHTLKGHVESVLKLKGIDVDTIQQAYTV

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00020	166721	174216	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01535	PMA1, PMA2	EC:3.6.3.6	Oxidative phosphorylation	map00190

Gene Ontology

biological_process
GO:0006754 ATP biosynthetic process

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0000166 nucleotide binding

GO:0016887 ATPase activity

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000020s00001759.1	PF00690.21	Cation_ATPase_N	20	83	1.30E-13
Glyur000020s00001759.1	PF00122.15	E1-E2_ATPase	102	392	7.90E-51
Glyur000020s00001759.1	PF13961.1	DUF4219	281	307	6.40E-12
Glyur000020s00001759.1	PF00702.21	Hydrolase	396	673	1.80E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.019
SRR1783600	control	12.182
SRR1783602	moderate drought stress	7.716
SRR1811619	moderate drought stress	7.766

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.690
DRR006520	Root Summer glycyrrhizin high producing strain	12.365
DRR006521	Root Winter glycyrrhizin high producing strain	3.225
DRR006522	Root Winter glycyrrhizin high producing strain	3.114
DRR006523	Root Summer glycyrrhizin low producing strain	8.075
DRR006524	Root Summer glycyrrhizin low producing strain	8.090
DRR006525	Leaf Summer glycyrrhizin high producing strain	69.975
DRR006526	Leaf Summer glycyrrhizin high producing strain	69.597

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.331
SRR2868004	Drought Stress (root)	13.597
SRR2967015	Control (root)	13.690

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	38.001
SRR9715740	Leaf	36.788
SRR9715741	Leaf	39.289
SRR9715739	Root	2.014
SRR9715742	Root	8.166
SRR9715743	Root	7.508

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.793
SRR8749028	MeJA induced 9h	9.224
SRR8749029	MeJA induced 9h	5.242
SRR8749030	Uninduced	0.737
SRR8749031	Uninduced	0.707
SRR8749032	Uninduced	1.193

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.431
SRR8400027	Control - Root	22.715