Gene detail

Gene detail information of Glyur000020s00001758

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G13610.1	8.00E-96	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	NP_001240180.1	0	1-aminocyclopropane-1-carboxylate oxidase homolog 6-like [Glycine max]
COG	YP_004903666.1	2.00E-29	putative oxidoreductase [Kitasatospora setae KM-6054]
Swissprot	tr\|Q9LHN8\|F6H1_ARATH	1.00E-127	Feruloyl CoA ortho-hydroxylase 1
trEMBL	tr\|C6T9W4\|C6T9W4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G13610.3}

Sequence

Transcript Sequence

>Glyur000020s00001758.1
AACCTATTGAATAGCAGCCATGAATAGCAAGTGATATCACCGGATGGAATTTTTTTGAGAAATAAAAAAAAAATCACTCCACTCCAGGTTCTGAAATCCCAACCATTATCTCTGAATCATGTCCACCCCCACCAATCTCATTGATTTTTTGGTGAACCAAGTCAATGGTGTAAAGGGTCTTGCTGATCTGAACCTCCCTAGTGTTCCTCACCAATATATCCAACCAGTCCAAGCTAGACTAGACAAGAGCAAAATTGTCCCTCAGGAATCAGAATCAATACCCATCATTGATTTCACAGACTGGGATGACCCACATGTCCAAGATTCCATTTTTAGTGCTGCAACTGAGTGGGGTTTCTTCCAAATTGTGAATCATGGGATCCCCATTAAGGTCCTTGATGATCTGAAGGCTTCTGTCTACAGGTTCTTTGAATTACCAGCTGAAGAGAAGAAGTGTCTGAAGGAGAATTCACCCCCGGAAGTTGTGAGGCTGGCAACCAGTTTTAGCCCTCACGCTGAGTCAGTGTTGGAGTGGAAGGATTACCTGCAGCTTGTGTATGCTTCAGAGGAGAAAATTCATGCATATTGGCCCGCTGTATGCAAGGATGAAGCACTGGAATATATGAAACATGCTGAAGCTTTTATTAGAAAATTACTAAAGGTGCTTCTTAAGAAGCTGAATGTGAAGGAGTTAGACAAAGCAAAAGAACACACTTTAATGGGTGCAATGATATTAGCCTTCAATTACTACCCAACTTGTCCTGACCCTGAACTAGTAGCAGGGGTATGCCCTCATTCTGATATATCATCAATTACTGTCCTTCTACAAGATGATATTGGTGGGCTTTATGTAAGAGGCAAAGATGGTGGTGACAGTTGGATCTATGTTCCTCCTGTTGATGGAGCATTGGTGATCAACATTGGGGATGTGCTACAGATAATGAGCAATGAAAGATACAAAAGCATAGAGCATCGAGTGGTTGCGAATAAAAGCAAGACCAGGATCTCCATGCCAATCTTTGTCAACCCAGTACCTGATGCTATTATTGGCCCTTTGCCAGAAATGCTGGAGAATGGAGATGAACCAAAATATAAACAAAATGGGAGCTTGGAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00020	162670	165873	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000020s00001758.1	PF14226.1	DIOX_N	54	152	1.40E-21
Glyur000020s00001758.1	PF03171.15	2OG-FeII_Oxy	207	304	2.10E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.319
SRR1783600	control	20.312
SRR1783602	moderate drought stress	18.958
SRR1811619	moderate drought stress	18.793

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.145
DRR006520	Root Summer glycyrrhizin high producing strain	31.645
DRR006521	Root Winter glycyrrhizin high producing strain	7.207
DRR006522	Root Winter glycyrrhizin high producing strain	6.873
DRR006523	Root Summer glycyrrhizin low producing strain	20.123
DRR006524	Root Summer glycyrrhizin low producing strain	19.902
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.280
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.125

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.206
SRR2868004	Drought Stress (root)	16.141
SRR2967015	Control (root)	14.933

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.274
SRR9715740	Leaf	16.104
SRR9715741	Leaf	15.479
SRR9715739	Root	11.615
SRR9715742	Root	18.205
SRR9715743	Root	18.723

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.020
SRR8749028	MeJA induced 9h	3.428
SRR8749029	MeJA induced 9h	0.490
SRR8749030	Uninduced	1.407
SRR8749031	Uninduced	0.274
SRR8749032	Uninduced	0.203

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.232
SRR8400027	Control - Root	20.571