Gene detail

Gene detail information of Glyur000020s00001750

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G12110.1	2.00E-65	Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6
NR	XP_007146187.1	7.27E-132	hypothetical protein PHAVU_006G019800g [Phaseolus vulgaris]
Swissprot	tr\|Q84WM9\|EF1B1_ARATH	2.00E-102	Elongation factor 1-beta 1
trEMBL	tr\|V7BNN2\|V7BNN2_PHAVU	3.00E-132	Uncharacterized protein {ECO:0000313\|EMBL:ESW18181.1}

Sequence

Transcript Sequence

>Glyur000020s00001750.1
GAATTCTGAGAGGGGTCCTCCTTGGTGGCCACTGGCCAGGGTGAGCTCATGCTCGGGCTTGGGGTTTACTAAAATCTGTATACATGCAAATACATCTACAACGTGCAAATAAAAATATAGGTTTATATANAAAATGGTGACCAATAAAAATAAAAATATAGATTAAAATGCCGTGAAGGTGAGGGGGAAAAAAAGAGGATTCCATTACACTTTGTTTGGATTGGATGAAAACAAATGAAAGGAAAGAAAGAGAGAACGGAAAGGAGAATGAAAAATANTGCACTTTTCCTGCGAGCGGGAGTGCGGTGTGCTCGCGATGCGAGGATTGGGATTTGGGAGAGAATATACTTTGGTGCCACTCCTCTAGTCTAGGGTTTGTTCAATTACTATATATATATATATATATATAAATATAAATTATCAATTATTGAATAAATTCCCTCCCTTCCTTTTGCGAGCTACTCTCTGACTTTGACGTTACTGTCTGATATCCGCAACAATGGCCGTTACCTTCTCAAATCTTCACAGCGAGTTGGGCCTCAAATCCCTAGACGGCTTCCTCTCTGGCAAGACCTACATTTCTGGGGATCAGTTTACAAAGGATGATATCAAAGTGTATGCTTATGTTTTGGAGAAGCCGGGTAACGCTTTTCTCAATGCTGGCAATTGGTACGATGCTGTCTCTTCTCACCTTGCTGCAAGCTTCCCTGGCAATGCTCAAGGGGTGAGATTTAGTGCCAAAGCTGTTGCTCCAGCTGAGGCTGCTCCTGCAAAACCGGATGCTTCTGCTGCTGAAGATGACGANGACCTTGATCTCTTTGGTGATGAGACAGAGGAGGACAAAAAGGCAGCAGAGGAAAGGGAAGCTGCTAAAAAGCCTTCCAAGAAGAAAGAGAGTGGCAAATCTTCTGTTCTGCTCGATGTTAAGCCTTGGGATGACGAGACAGACATGAAGAAGCTGGAAGAAGCTGTTCGCAGTGTTGAGATGCCTGGTCTATTCTGGGGGGCATCCAAACTGGTTCCTGTTGGTTATGGGATCAAGAAGTTGCAGATCATGTTAACTATTGTTGATGACCTTGTATCCGTGGACTCTCTTATTGAGGAGCGCCTGACAGTTGAGCCTTGCAATGAGTATATCCAAAGCTGTGACATCGTTGCATTTAACAAAATTTAAGTTTATTGTTTTGGACTTCGGTATGAGCCATTTTCAAGCGGCTGATTTGTCTACCCTTTTTCATAATTTNTGTCTAGTTTGTGTTTTAATGGTGGTCTTCTGTTACTAGAATTCTGAGACAAGTNAAAGGAATATAATCTGAATATCTATGTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00020	114037	116771	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006414 translational elongation

cellular_component
GO:0005853 eukaryotic translation elongation factor 1 complex

molecular_function
GO:0003746 translation elongation factor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000020s00001750.1	PF00736.14	EF1_GNE	135	224	4.90E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.209
SRR1783600	control	11.365
SRR1783602	moderate drought stress	13.155
SRR1811619	moderate drought stress	13.319

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.390
DRR006520	Root Summer glycyrrhizin high producing strain	22.257
DRR006521	Root Winter glycyrrhizin high producing strain	9.606
DRR006522	Root Winter glycyrrhizin high producing strain	9.390
DRR006523	Root Summer glycyrrhizin low producing strain	18.098
DRR006524	Root Summer glycyrrhizin low producing strain	18.114
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.840
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.615

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	78.545
SRR2868004	Drought Stress (root)	40.481
SRR2967015	Control (root)	40.561

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.244
SRR9715740	Leaf	26.363
SRR9715741	Leaf	19.720
SRR9715739	Root	25.831
SRR9715742	Root	25.372
SRR9715743	Root	29.101

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.979
SRR8749028	MeJA induced 9h	15.506
SRR8749029	MeJA induced 9h	16.476
SRR8749030	Uninduced	8.751
SRR8749031	Uninduced	3.618
SRR8749032	Uninduced	8.236

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	56.319
SRR8400027	Control - Root	56.548