Gene detail

Gene detail information of Glyur000020s00001747.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G56200.1	4.00E-10	C2H2 type zinc finger transcription factor family
NR	KHN30811.1	5.41E-68	Zinc finger protein 1 [Glycine soja]
Swissprot	tr\|Q9SSW2\|AZF2_ARATH	4.00E-07	Zinc finger protein AZF2
trEMBL	tr\|K7LXA2\|K7LXA2_SOYBN	8.00E-65	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G04041.1}

Sequence

Transcript Sequence

>Glyur000020s00001747.1
ATGGATGAAGATCATGTCGACCATGATCAAGTTTCAGATCATCATGAATATCAGAAGAAGATGAAACGATCTACTCCTTCAGGGTCTTCTTGTGAAGTCGAACATGCCGAAACTGACGATAGGGTTTCTGTTATTAAGGACGATATCGATACAGCTCCTTCAGCAACAACACTACAACACGAGTGCAATATTTGTNGCAAGACTTTCACCAACGGCAAGGCATTGGGTGGACACNGAAGATCTCACTTTCAAGCTGCCAAGAAGAAGCTTCATAACATCAAGGTGAAAACCCGTTTCTCAAATCACTCAAAAGTACTAGTAGAAGATCATAGCAATAGGACTAGTTGTGATGTTGATGGTGAGAATGGGGAACCAATTTGCTATCTTTGCAAGAAGAAGTTCCCAACAAAGAATGCTCTGTATGGGCACATGAGGGCCCACCCTGACAGGATCTGCAGGGGAATTTGCCCCCCTAATAATAATCATCACTCTCATCATGAGCACATTAACAATTCTTCTGATTCTTCACTGGAACAGAATATTAATAATAAAGAAGATCAAGGTGTTGTTGCAATTGCACCAAAGGGGCATCACACAGATGCTATTGATCTTTCAAATTCCACCTTATTACCAAGCTGGCAAAAGAAAGATAAACGAGGGAGAAAATGTATTGGTAGTTATGAGGCTGCTACAAACCTCTTGTACCTTTGTGCTGAGTACATTCGTGCTGCNGAGTCTGTCAATTATAAGAAGGGTGGTGGTGGTGGTAGTAGTGTTAATGTTGAGCCTCCAAAGAGTACTACTAGTCCTCATGAAGTGGTGGTCCCAATGCAGAGTAAGAATTATAAAAGGAAGAAGATTGGTGAGTGTGAGTCCTCAAGCACTGGGGAGGAAAATGCACCTGCACACAAGATAAAATGTATATTTATCAGTGGGTCATTAATGAAGTTTGGGAGTGATGGGGGTAGTGGTGGTGATTGTGACAATGATAAGAGAAAAAGTAGAGGAAAGAAGGGTTTATCTGAATCTGGGGTTGAGAAAATTGCAGTGAATATTATGGATGTTGAAGGGCATTGTGGGAAGAAGGATGTGATGAATGAGAGAAGTTCTGATATTGATGATGATGACAAAAGAAAGGTGAAAAAGGGGAAGAAGATCATCATAAAAGACTCAACAGATGCAGAGAAACTACTGGGGGGCTATGAGTGTGGCATTTGTGGTAAATCATTCTCAACTTTTCAAGGCTTAGGGGGACACAAATCAGTACACAAAGAGAAGAACATTGTAATAAGTGATACCATCATGGATGATGAATCAAAGCACTCAGATGCTACAGTGACTGATGAAGGAAACAAATATTCTCCCATTTCTAATATTGATCATGTGCCTAAAGTGGATCAGGATACACCACCATTGAGTGAAGATGAGGAAGCAAGTCAATCTACTACTGAACCAAAAAATTTGGACTTTGATCTGAATGAGCCATATGTTATGCTGGACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00020	89135	90637	-

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000020s00001747.1	PF13912.1	zf-C2H2_6	60	82	2.10E-05
Glyur000020s00001747.1	PF13894.1	zf-C2H2_4	126	147	0.012
Glyur000020s00001747.1	PF13912.1	zf-C2H2_6	401	424	1.40E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.000
SRR2868004	Drought Stress (root)	0.001
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.001
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.240
SRR8749028	MeJA induced 9h	1.100
SRR8749029	MeJA induced 9h	0.824
SRR8749030	Uninduced	1.706
SRR8749031	Uninduced	1.041
SRR8749032	Uninduced	1.796

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.000
SRR8400027	Control - Root	0.001