Gene detail information of Glyur000020s00001733 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G16940.2 | 2.00E-52 | carbon-sulfur lyases |
| NR | XP_003553108.1 | 1.33E-85 | PREDICTED: centromere protein V-like isoform X1 [Glycine max] |
| COG | YP_007134818.1 | 3.00E-35 | glutathione-dependent formaldehyde-activating GFA [Stanieria cyanosphaera PCC 7437] |
| trEMBL | tr|I1MZF8|I1MZF8_SOYBN | 4.00E-85 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G04720.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00020 | 22914 | 24315 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000020s00001733.1 | PF04828.9 | GFA | 45 | 117 | 1.20E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 26.906 |
| SRR1783600 | control | 26.476 |
| SRR1783602 | moderate drought stress | 26.632 |
| SRR1811619 | moderate drought stress | 25.991 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.997 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.035 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 91.358 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 89.193 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.186 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.305 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.523 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.373 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.697 |
| SRR2868004 | Drought Stress (root) | 38.609 |
| SRR2967015 | Control (root) | 31.747 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.225 |
| SRR9715740 | Leaf | 15.938 |
| SRR9715741 | Leaf | 21.395 |
| SRR9715739 | Root | 5.653 |
| SRR9715742 | Root | 12.792 |
| SRR9715743 | Root | 11.613 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 73.728 |
| SRR8749028 | MeJA induced 9h | 81.004 |
| SRR8749029 | MeJA induced 9h | 105.393 |
| SRR8749030 | Uninduced | 247.215 |
| SRR8749031 | Uninduced | 177.594 |
| SRR8749032 | Uninduced | 168.005 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 37.752 |
| SRR8400027 | Control - Root | 25.693 |