Gene detail

Gene detail information of Glyur000020s00001732.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G37510.1	NADH-ubiquinone dehydrogenase, mitochondrial, putative
NR	XP_004503119.1	PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial-like [Cicer arietinum]
COG	YP_002297459.1	NADH dehydrogenase subunit G [Rhodospirillum centenum SW]
Swissprot	tr\|Q43644\|NDUS1_SOLTU	NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial (Precursor)
trEMBL	tr\|I1MZF9\|I1MZF9_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G04730.1}

Sequence

Transcript Sequence

>Glyur000020s00001732.1
CTTGAGAAGGTCTTTTGAGAAAATTGAAAATGTATAGGTCGGTTAATAGACTGTTGTCCAGAATTCCGGTGGACGCTTGCATTCATTTTTCCACACTAAGCATAGACCATTTCATTAACGGTTCGGGTTGAGGGGAAACCCGAATCTCATGGCAAAGCAACCCACCCACCCATATCTACACAGATTCATTTTCTTCTTCATCCCCAACACAATACACACACACATCAAACAACTCAATAAAATTTAAGGTTCCTCCTACGATCTGAGACACCTCTCTGTCGTAGTACCACCAAACAAGGTCACAAACTCACAATCTAGACAAAAAGCAAGAGAGAGTGAGTGGGAGAGNGAGAATCTAGAGAAAAATGGGGCTAGGCTTGTTAGCTTCGAAGGCCATGAGACCTGCCTCAAGGCTCCTCAATTTCCAAAACCCTAACAACCTCCTCCTCCGAACCATCGTTTCCAAACCCGAGCTTCGGAATCCGGAAGCTTCTGCCGCACAAGCCCAGCCGGAGCAGCCGCCGGCCGATCTCCCTCCCCGGACTCCGGTCGGCGGCGCAAGGCTACACTTCCCCAACCCGGATGATGCCATCGAGGTGTTCGTCGACGGCTACCCCGTGAAAATCCCCAAGGGAATGACCGTTCTTCAGGCCTGTGAGGTTGCCGGCGTCGACATCCCTCGCTTTTGCTACCACAGCAGGCTTTCCATCGCCGGAAACTGCCGTATGTGCCTCGTCGAGGTCGAGAAATCTCCCAAGCCTGTTGCTTCCTGCGCCATGCCCGCTCTTCCTGGGATGAAAATCAAGACCGACACACCTGTGGCAAAGAAAGCTCGAGAAGGGGTGATGGAATTTTTATTGATGAATCATCCGTTGGATTGCCCAATTTGTGATCAGGGTGGAGAATGTGATCTTCAGGATCAGTCGATGGCATTTGGCGCTGATCGTGGTCGGTTCACTGAAATGAAGAGATCTGTGGTGGATAAAAATCTTGGACCTTTGGTGAAGACTGTGATGACTCGGTGCATTCAATGTACAAGGTGTGTTAGATTTGCATCAGAGATTGCAGGGGTTCAGGATCTCGGCATGTTAGGTCGTGGCAGTGGAGAAGAGATTGGAACATATGTTGAAAAACTTATGACAAGTGAACTTTCTGGAAATGTGATTGATATCTGTCCTGTTGGAGCACTCACTTCAAAACCTTTTGCATTTAAAGCCCGGAATTGGGAGTTGAAGGGTACAGAGAGTATTGATGTTACTGATGCTGTTGGATCCAATATTCGAATTGATAGCAGAGGACCTGAAGTCATGCGCATTCTTCCTCGTTTAAATGAGAACATAAATGAAGAATGGATTTCGGACAAAACCCGTTTTTGTTATGATGGTTTGAAGAGGCAGAGGTTAAACGACCCTATGATTCGTGGTCCTGATGGTCGCTTTAAGGCTGTGAACTGGCGTGATGCCCTTGCTGTGATAGCAGATATTGCACACCAAGTTAAACCAGATGAAATTGTTGGAATATCTGGCAAACTTTCTGATGCTGAGTCCATGATTGCACTAAAAGATTTCGTAAACAGGATGGGTTCAAATAATGTGTGGTGTGAAGGCATTGGCGTAAATACTAATGCTGATTTCAGATCAGGATATATTATGAACACTAGCATTGCTGGTCTTGAGAAAGCAGATGTTTTCCTGTTGGTCGGTACCCAGCCACGAGTGGAAGCTGCCATGGTTAATGCCAGAATACGCAAGACAGTCACATCAAACCAAGCCAAAGTTGGGTACATTGGGCCTACTACTGCTACTGATTTCAACTATGATCACCAGCATCTTGGTACTGGCCCTCAAACACTTCTTGAAATTGCTGAGGGTCGCCACCCATTTTCCAAGACCATTTCAAATGCCAAAAACCCTGTTATCATTGTCGGTGCTGGGATTTTCGAGAGGAAGGACCAGGATGCAATTTTTGCGGCTGTTGAAACCATAGCAAAACAAGGCAATGTTGTTAGGCCTGACTGGAATGGCCTTAATGTATTACTTCTCAATGCTGCCCAGGCTGCTGCACTTGACCTTGGACTTGTGCCCCAATCTGAGAATAGCCTTGAGTCTGCAAAATTTGTATATTTGATGGGAGCTGATGATACAAACTTGGACAAGATCCCGAATGATGCCTTTGTTGTTTATCAAGGTCACCATGGTGACAAGAGTGTTTATCGTGCTAATGTCATTTTGCCAGCAGCAGCATTCAGCGAGAAGGAAGGTACTTATGAAAATACCGAAGGATGCACACAGCAAACATGGCCTGCAGTTCCAACAGTTGGTGACTCCAGAGATGATTGGAAGATAATTCGAGCTCTGTCTGAGGTAGCAGGGGTACGTTTACCCTATGATACAATTGGGGCTGTTCGTGCCCGAATGAGGACTGTAGCCCCAAACCTTGTGAACATGGATGAGAGAGAGCCAGCCACATTGCCATCTTCACTGAGACCAACCTTCACTAAGAAGGTGGATNCAACTCCATTTGAGATTGCAGTTGAGAATTTCTATATGACTGATTCCATTACCAGGGCATCAAAGATAATGGCTCAATGCAGTGCTATGCTGTTGAAGAAATGAAGCATGGGTTTTTTTTATATTTTGGTTTAAATAAAAATGCAGGTTTACGTTTTTTTTTTCCTGGCCAAGCACGACCTTGCTTGCACAAAGCTTCTCGGACGTTGGAAGTACCCAATAAATAGAAATTAGGCTTTATCTGTTCCATCTGTATTATGCGGTGTAAAAGCACCACTTTTTAGATCCGTTGTCATATACAATTTGGGTTATCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00020	16942	22434	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K03934	NDUFS1	EC:1.6.5.3 1.6.99.3	Oxidative phosphorylation	map00190
			Alzheimer's disease	map05010
			Parkinson's disease	map05012
			Huntington's disease	map05016
			Non-alcoholic fatty liver disease (NAFLD)	map04932

Gene Ontology

biological_process

GO:0042773 ATP synthesis coupled electron transport

GO:0055114 oxidation-reduction process

cellular_component
GO:0016020 membrane

molecular_function

GO:0008137 NADH dehydrogenase (ubiquinone) activity

GO:0009055 electron carrier activity

GO:0016491 oxidoreductase activity

GO:0016651 oxidoreductase activity, acting on NAD(P)H

GO:0051536 iron-sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000020s00001732.1	PF13510.1	Fer2_4	74	151	1.90E-17
Glyur000020s00001732.1	PF10588.4	NADH-G_4Fe-4S_3	157	197	5.60E-17
Glyur000020s00001732.1	PF00384.17	Molybdopterin	345	666	7.10E-71
Glyur000020s00001732.1	PF09326.6	DUF1982	711	742	5.60E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	72.687
SRR1783600	control	73.038
SRR1783602	moderate drought stress	57.966
SRR1811619	moderate drought stress	57.337

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	88.595
DRR006520	Root Summer glycyrrhizin high producing strain	87.629
DRR006521	Root Winter glycyrrhizin high producing strain	63.745
DRR006522	Root Winter glycyrrhizin high producing strain	62.018
DRR006523	Root Summer glycyrrhizin low producing strain	62.395
DRR006524	Root Summer glycyrrhizin low producing strain	62.651
DRR006525	Leaf Summer glycyrrhizin high producing strain	46.066
DRR006526	Leaf Summer glycyrrhizin high producing strain	45.815

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	110.152
SRR2868004	Drought Stress (root)	93.127
SRR2967015	Control (root)	85.303

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	56.256
SRR9715740	Leaf	53.046
SRR9715741	Leaf	56.937
SRR9715739	Root	69.204
SRR9715742	Root	95.375
SRR9715743	Root	91.884

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	59.751
SRR8749028	MeJA induced 9h	80.851
SRR8749029	MeJA induced 9h	44.442
SRR8749030	Uninduced	45.394
SRR8749031	Uninduced	22.545
SRR8749032	Uninduced	27.700

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	92.678
SRR8400027	Control - Root	98.923