Gene detail information of Glyur000020s00001729 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G31040.1 | 1.00E-12 | PLATZ transcription factor family protein |
| NR | XP_006575478.1 | 5.97E-68 | PREDICTED: uncharacterized protein At3g50808-like [Glycine max] |
| trEMBL | tr|V7B7R6|V7B7R6_PHAVU | 2.00E-66 | Uncharacterized protein {ECO:0000313|EMBL:ESW13927.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00020 | 1386 | 4351 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | PLATZ |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000020s00001729.1 | PF04640.9 | PLATZ | 77 | 140 | 2.40E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.088 |
| SRR1783600 | control | 5.309 |
| SRR1783602 | moderate drought stress | 8.329 |
| SRR1811619 | moderate drought stress | 8.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.749 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.289 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.357 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.828 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.882 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.185 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.062 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.343 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.953 |
| SRR2868004 | Drought Stress (root) | 5.896 |
| SRR2967015 | Control (root) | 4.445 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.472 |
| SRR9715740 | Leaf | 3.566 |
| SRR9715741 | Leaf | 4.671 |
| SRR9715739 | Root | 0.047 |
| SRR9715742 | Root | 1.076 |
| SRR9715743 | Root | 0.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.611 |
| SRR8749028 | MeJA induced 9h | 6.633 |
| SRR8749029 | MeJA induced 9h | 3.929 |
| SRR8749030 | Uninduced | 15.826 |
| SRR8749031 | Uninduced | 9.756 |
| SRR8749032 | Uninduced | 5.492 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.034 |
| SRR8400027 | Control - Root | 8.800 |