Gene detail

Gene detail information of Glyur000019s00002184.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07970.1	4.00E-110	Pectin lyase-like superfamily protein
NR	KHN26323.1	0	Polygalacturonase [Glycine soja]
COG	YP_003391696.1	2.00E-30	glycoside hydrolase family 28 [Spirosoma linguale DSM 74]
Swissprot	tr\|P35336\|PGLR_ACTDE	3.00E-168	Polygalacturonase (Precursor)
trEMBL	tr\|K7MYD0\|K7MYD0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G32241.2}

Sequence

Transcript Sequence

>Glyur000019s00002184.1
ATGGCCCTCCTCATACGACATACCCTCCTCTCATTCACCATCATCATCATTTCATTTGTTGCTTGTTATAGCACCTTGCAATTAGAGGACCCACTTATTAGTCTGCATGTTGATGATCATTCACCTTTCATTGATGATGGTGGGACATTCAATAAGAACCAGCTGATTAAGCAATGCACAGATGTTTTTAGCTCAAATGAGTTGGGTGGCACTTCCCCTTCGCTTGAAATGGCATTCAAGAAGGCTTGGAAAGAAGTATGTTCNTCTGGGGATGCAGTTCTTGTGGTGCCTCAAGATAATAATTATCTGCTCAAACCAATCAGATTCTCTGGTCCTTGCAAATCTAACATCGCAGTCNAGATATCTGGAACCCTTGAAGCATCAGAAGACCCATCAGATTACAGCGAAGACAGCAGACACTGGCTTGTATTTGATAGTGTTCAGAAACTGTTGGTGAATGGTGGTGGAACCATCGATGGAAAGGGTAACATATGGTGGGAAAACTCATGCAAAAGGAACAAAAAGCGCCCTTGCAAGGATGCCCCAACAGCCCTAGCTTTTGATGATTGCGAGGACTTGGTAGTGGGGAACTTGACGATAGTAAATGCACAACAAATTCATGTTTCATTCCACGACTCTGTGAATGTTAAAGTTTCTGGTCTCAATGTGACCGCACCGGGAGATAGTCCTAACACTGATGGGATTCATGTCACAAATACCCAAAACATCCTAATCTCAAATTCTGTCATAGGAACTGGTGATGATTGTATATCAATTGTACATGGATCCAAGAAGGTAGAAGCCACAAACATAACTTGTGGACCTGGCCATGGTATCAGTATTGGAAGNTTGGGGGCTGGAAAATCCAAGGAAGTTGTTTCGGGAGTATTAGTGAATGGAGCGAAGCTTTCTGGAACTAAAAATGGAGTTAGAATTAAGACATGGCAGGGAGGTTCAGGAAGTGCTAGCGACATCCAGTTTCAGAACATTGAGATGGACAATGTGACCAACCCCATAATAATAGACCAGAATTACTGTGACAAAAAAAAGAAGCCATGCAAAAAACAGAAATCGGCGATCCAGATAAGCAATGTGTTGTACCAGAACATAAAAGGTACAAGTGCTTCTGATGTGGGTGTGAAGTTTGATTGCAGCGAGAAATTTCCATGCAAGGAGATTGTATTGCAGAACATAGACCTTCAATGTGAAGGATCAGGAGACGCTGCCAAGGCTTTATGCAACAACGTTGAATTGTCTTGCAAAGGACACGTTACTCCTCGCTGCGACTCATCATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00019	576733	579363	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH28

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004650 polygalacturonase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000019s00002184.1	PF00295.12	Glyco_hydro_28	87	420	7.70E-116

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.501
DRR006520	Root Summer glycyrrhizin high producing strain	0.497
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.588
DRR006524	Root Summer glycyrrhizin low producing strain	0.490
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.367
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.231

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.396
SRR2868004	Drought Stress (root)	0.255
SRR2967015	Control (root)	0.142

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	1.481
SRR9715743	Root	0.852

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.106
SRR8749028	MeJA induced 9h	0.003
SRR8749029	MeJA induced 9h	0.022
SRR8749030	Uninduced	0.021
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.087

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.665
SRR8400027	Control - Root	3.180