Gene detail information of Glyur000019s00002182 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G41835.1 | 7.00E-99 | zinc finger (C2H2 type, AN1-like) family protein |
| NR | NP_001239954.1 | 4.00E-173 | uncharacterized protein LOC100806459 [Glycine max] |
| Swissprot | tr|Q8VZ42|SAP11_ARATH | 5.00E-124 | Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 |
| trEMBL | tr|C6TE01|C6TE01_SOYBN | 1.00E-173 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G29400.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00019 | 567326 | 570354 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000019s00002182.1 | PF01428.11 | zf-AN1 | 13 | 53 | 6.70E-14 |
| Glyur000019s00002182.1 | PF01428.11 | zf-AN1 | 101 | 142 | 7.90E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.508 |
| SRR1783600 | control | 8.647 |
| SRR1783602 | moderate drought stress | 5.267 |
| SRR1811619 | moderate drought stress | 5.386 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.852 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.848 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.942 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.920 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.826 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.920 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.793 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.733 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.836 |
| SRR2868004 | Drought Stress (root) | 6.259 |
| SRR2967015 | Control (root) | 6.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.287 |
| SRR9715740 | Leaf | 3.087 |
| SRR9715741 | Leaf | 2.337 |
| SRR9715739 | Root | 6.465 |
| SRR9715742 | Root | 12.100 |
| SRR9715743 | Root | 9.234 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 43.328 |
| SRR8749028 | MeJA induced 9h | 43.888 |
| SRR8749029 | MeJA induced 9h | 59.572 |
| SRR8749030 | Uninduced | 21.051 |
| SRR8749031 | Uninduced | 20.621 |
| SRR8749032 | Uninduced | 17.553 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.904 |
| SRR8400027 | Control - Root | 13.100 |