Gene detail information of Glyur000019s00002179 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G01170.2 | 1.00E-31 | Protein of unknown function (DUF1138) |
| NR | XP_003520606.1 | 1.12E-45 | PREDICTED: uncharacterized protein LOC100306564 isoform X1 [Glycine max] |
| trEMBL | tr|C6SZW7|C6SZW7_SOYBN | 4.00E-46 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G00700.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00019 | 551543 | 553479 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000019s00002179.1 | PF06592.8 | DUF1138 | 39 | 111 | 2.20E-44 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 49.909 |
| SRR1783600 | control | 50.269 |
| SRR1783602 | moderate drought stress | 38.075 |
| SRR1811619 | moderate drought stress | 37.766 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 47.696 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 47.395 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.920 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.434 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 42.063 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 41.888 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 50.190 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 49.639 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 242.748 |
| SRR2868004 | Drought Stress (root) | 183.811 |
| SRR2967015 | Control (root) | 141.729 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 169.472 |
| SRR9715740 | Leaf | 164.470 |
| SRR9715741 | Leaf | 156.181 |
| SRR9715739 | Root | 65.689 |
| SRR9715742 | Root | 69.791 |
| SRR9715743 | Root | 58.583 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 75.619 |
| SRR8749028 | MeJA induced 9h | 42.591 |
| SRR8749029 | MeJA induced 9h | 73.632 |
| SRR8749030 | Uninduced | 57.218 |
| SRR8749031 | Uninduced | 57.524 |
| SRR8749032 | Uninduced | 54.208 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 171.465 |
| SRR8400027 | Control - Root | 174.859 |