Gene detail

Gene detail information of Glyur000019s00002160

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G39710.1	6.00E-74	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_003528536.1	0	PREDICTED: protein Rf1, mitochondrial-like isoform X1 [Glycine max]
Swissprot	tr\|Q9FIX3\|PP407_ARATH	5.00E-83	Pentatricopeptide repeat-containing protein At5g39710
trEMBL	tr\|A0A072U1P6\|A0A072U1P6_MEDTR	0	PPR containing plant-like protein {ECO:0000313\|EMBL:KEH23629.1}

Sequence

Transcript Sequence

>Glyur000019s00002160.1
ATGTCAGCTAAGTCTCCTCTCCTCTCTCTCTTGAGGATAATAAGGAGGCACCACCATTCTCCCCCCACTCTCTTCTCTCAATTATTCTCTCACTCCCTCTCCTCTTCTTCTTCTTCTTCTTCTTCCCAATTCGACCCTGATTCCTCCCATTATTACTTGACCCAATTCCTCCCTCTCCCTCACAATTCCAACATAATCACCCCAAGGGAACGCCGAATCCTCGTCCTCGGTCTATCCAACATCGTCAAAATCGACCAGGGTTTCGTCTTGAAAGCATTCTCCCTTCGTTTCTGTCCATTCTTCCTCGTCAAGATCATGAAGCTGTTACACACCCACGACGCCGCCTCCGCATTCTTCAAGCTAGCAGCATTCCACGATCCCGATGATGAACTCCTTCGTTCCTGTTGCGTCGCCGCGCATGTTCTGGCCGCTCAGCGCCTCCACCTCCTCGCACAGGACGTGGTTTCATTCCTCTTCGCGAGGATCGGGGCCTGTAGAAGTAAGGAACTTGTGGATTTCATGTGGAGGAACCACTCTCAGTATGAGTCTGATTTCTCTGTCTTGAATACCCTCATGAGGGGTTTTTTGAATGCTGGGATGGGTTTAGAGGCATTGGATGTTTTGCATAGGATGAGAGTTTTGGGACTTAGGCCTGGGTTGTCTGCTATTACCATTCTCCTTAGGTTGTTGATTAGGGTTGGTGATTATGCTAGTGTCTGGAGGTTGTTTAAAGACATGCTCCGTTTAGGGCCTACGCCTTCGTGTATCACATTCAATGTTATGATTTACGAGTTCTGTAGACTGCGGCGGGGGGTTGTTGTTGGGGAGAGTTTGTTGCATTTGATGCCGAGGTTCCGGTGTTGTCCTGATGTTGTTACTTATAACATTCTTATTAATGCGTACTGTGTTCNGGGGAAGACTTCGGTTGCGATTGGTTGGATGCATTCGATGATGGAAGGAGGTTGTGAGCCGAGTGTTTCCACGTTTAATACGATTATGCACGCGCTTTGTAGGGAAGGGAATGTTGTGGAGGCNCGGAGGCTATTTGATANGATTCGGGATATGGGGATTGCTCCCAATGCTGCGATATACAACACGCTGATGGATGGGTATGTGAAGGCGAGGGAGATTGGTCAGGCTAGCATGCTTTATGAGGAAATGAGGACAAAGGGCGTTTCTCCTGATTGTGTGACTTTCAACATTTTTGTTGGGGGGCATTATAAATATGGGAGGAAAGAAGATTGGAACAGGCTGTTAAAAGATGCAATAGTAACTGGGTTTTTTCAGGATTGCTCGCTATATGATGTGACGATATCGTGGCTGTGTTGGGCTGGTAGACTTGATGAGGCCATGANGTTATTAAAAGANTTGCTTGAGAAAGGACTGACTCTTNGTGTGGTTGCATTTAACTCGTTAATAGGAGCCTATGGCAGGGAAGGTTTAGAGGACAAAGCTTTTGAAGCCTATCGTATNATGGCTAAGTGCGGTTTCAATCCTTCATCATCCACGTGTAATTCTTTGCTTATGGGTTTGTGTAGGAAAGGGAGGCTGCAAGAAGCCAGGACACTTTTGTATAGGATGTCAGAGAAGGGGTTTCCTATCAACAAAGTGGCTTACACTCTGCTTTTTGATGGATATTTCAAGATGAATGATCTGGATGGGGCTCTATTTATATGGAAGGAAATGAAGGAAAGGGGTATGTATCCAGATGTTGTTGCCTTTACAGCCTTGATAGATGGACTTTCAAAAGCAGGCAATGTCGAGGAGGCATATGAAGTGTTCTCAGAAATGTCAGCTATGGGTTTTGTTCCTAATAATTTTGCTTATAATTCTTTGATTNGTGGTCTTTGCAACTGTGGGAAGGTGACTGAAGCATTAGAGTTGGAGAAAGAGATGAGGCTAAAAGGCCTTCTTCCCGATACCTTTACCTTCAATATCATCATTGATGGGTATTGTAGAGAAGGAAAAATGAAATCTGCAGTCAGTNCATTTCTTGACATGCACCGTATTGGTTTGATGCCGGATATATTCACGTTTAACACATTAGTTGGTGGATACTGTAAAGCATTTGACATGGTTGGTGCAGATGAGATTGTTAATAAAATGNACACTTGTGGGTTTGACCCAGATATCACAACCTATAATATACGAATGCATGGTTACTGCAGTATTCGTAAAATGAACCGAGCAATTGTCATTTTGGATGAGCTTATCTCTGCTGGTATTGTTCCAAACACAGTNACATACAACACTATGATGAGTAGTATTTGTAGTGATATTTTGGATCGTGCTATGATTCTTACTGCAAAATTACTTAAGATGGGTTTTATTCCAAATGTGATTACAACCAATATATTGTTGTCNCACTTTTGCAAGCAAGGGATGCCAGAGAGGGCGTTACTATGGGGTCAAAAGTTAAGGGAGATTTGCTTTGATTTTGATGAAATCTCCTATAGAATACTGGACAATGCNTACCATTTGGTGCAGGATGAGGTTGAACTTGTGAGAGGAACNTATCAAAAGAGCCTTTTTCTGGATTTCCTAATGTACATTACATTTGATTATTTTTCAAGAAATAGAACTCATAACATAGAGAATGAGAATANTTTGAAGTTGATTGAAAGTCATAGTGTGGAGTTTCTGTTAAACACTTCGAACTTAGTTCATTCAGCTATAGCAGACAAGACTGATGTTGTAGGAATATTTCTGGAACCAATGCCTATTGTGCAGCATGAGACCTCCTCAATGGCCTAAGCGGCTGCGAGAAGTGTAACGGGACAATGGTGTCTTGGGAAATAGAATGAATTTTCCAGCTATAGCAAGAGGCCAGCTATCAGATGGCAAAAGCAATGGTAATGACTTACACCCAAAATGCTAAAGCTCCAGTATGAATATTTTTGAGCAACTTGCATGCAGAAATTTTATAATTTGTTCATAGAAGACTGCTAAAATATGTCGACAACAAGAATTCAATAATATAGTAATATTGTAAAATGGAGCATAGAGGTCTTGAACTTTGGATAATGACCAAGAGCAGCTTTGCGGGAAATTCTCATAATTGGAATGTTTAAATCTCTGGAATATATACAAAGGTTCAATTGAAACCAATAAAGCAGCTTTCAGAAGATTTTGATTCAAGAGAACGNGCTAATAAGTCTGCAAACGAGAAGAATGAAATGGAGAGGATATCAAGTGGTGGAGATTTTNTCAATTTCACC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00019	481506	486653	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000019s00002160.1	PF01535.15	PPR	188	216	0.00065
Glyur000019s00002160.1	PF13041.1	PPR_2	224	267	2.30E-07
Glyur000019s00002160.1	PF13041.1	PPR_2	289	338	3.60E-15
Glyur000019s00002160.1	PF13041.1	PPR_2	359	407	3.90E-13
Glyur000019s00002160.1	PF01535.15	PPR	437	462	0.026
Glyur000019s00002160.1	PF13041.1	PPR_2	466	513	1.20E-09
Glyur000019s00002160.1	PF01535.15	PPR	537	566	9.60E-06
Glyur000019s00002160.1	PF13041.1	PPR_2	569	618	5.40E-16
Glyur000019s00002160.1	PF13041.1	PPR_2	639	688	3.60E-16
Glyur000019s00002160.1	PF13041.1	PPR_2	709	758	4.00E-13
Glyur000019s00002160.1	PF01535.15	PPR	782	807	0.12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.438
SRR1783600	control	3.513
SRR1783602	moderate drought stress	5.125
SRR1811619	moderate drought stress	5.299

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.568
DRR006520	Root Summer glycyrrhizin high producing strain	3.429
DRR006521	Root Winter glycyrrhizin high producing strain	1.659
DRR006522	Root Winter glycyrrhizin high producing strain	1.556
DRR006523	Root Summer glycyrrhizin low producing strain	2.704
DRR006524	Root Summer glycyrrhizin low producing strain	2.386
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.615
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.579

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.654
SRR2868004	Drought Stress (root)	4.973
SRR2967015	Control (root)	5.044

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.122
SRR9715740	Leaf	1.169
SRR9715741	Leaf	1.249
SRR9715739	Root	0.679
SRR9715742	Root	2.018
SRR9715743	Root	1.324

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.757
SRR8749028	MeJA induced 9h	0.913
SRR8749029	MeJA induced 9h	0.188
SRR8749030	Uninduced	0.143
SRR8749031	Uninduced	0.063
SRR8749032	Uninduced	0.095

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.779
SRR8400027	Control - Root	6.949