Gene detail

Gene detail information of Glyur000019s00002153

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G41700.1	0	ATP-binding cassette A1
NR	AES81355.2	0	ABC transporter family protein [Medicago truncatula]
COG	YP_686342.1	8.00E-47	ABC-type transport system, ATPase component [Methanocella arvoryzae MRE50]
Swissprot	tr\|Q84M24\|AB1A_ARATH	0	ABC transporter A family member 1
trEMBL	tr\|G7KTH7\|G7KTH7_MEDTR	0	ABC transporter family protein {ECO:0000313\|EMBL:AES81355.2}

Sequence

Transcript Sequence

>Glyur000019s00002153.1
NTTTTTTGGCTTTTTCCGTTAGTTCTTATTCACCATCTCCCCACACTCGCCACCACACCAAACGAAACTGTGTGAGTTGATTCAACGTGAAGCTTACGATTCTTCCCTTTTTTGATCTCCTTCCTTCGCCTACTCCCTAGAACCCCTTCCCAGTTCTAGGGTTTTGCAGCCATGGGAACCGCCTGGAGGCAGTTGAAGGTTATGCTCAGGAAGAACTGGCTCCTCAAAATTCGCCACCCTTACGTTACTGCTGCCGAGATTTTGCTCCCAACGATTGTGTTGTTGCTGTTAGTAGCTGTAAGGACACGAGAGGATACACAAATTCATCCAGATCAATCGCACATTCAAAAAGACATGTTTGTAGAAGTGGGGAAAGGTATATCTCCTAACTTCCAACAAGTTTTGGAATCCTTGTTTGATAAGGGAGAGTATTTAGCTTTTGCACCTGATACCAATGAGACAAAGCTGATGATAGACGTACTGTCAATCAAATTTCCGCTCTTGAAGCTTGTTAGTAGAGTATACAAAGACGAGGTAGAGTTGGAAACATACATCCGGTCAGATGCTTATGGTGCCTGCAATCAAGNAAGGAATTGTTCAAATCCCAAAATTAAAGGAGCAGTTGTATTTTATGAACAAGGTCCTCAGTCATTTGATTATAGCATACGCCTCAATCATACATGGGCTTTCTCCGGTTTTCCAGACGTTACAACAATAATGGATACAAATGGTCCTTTTCTTAATGACTTGGAACTTGGTGTTAGTGCTGTACCAACAATGCAATACAGCTTCAGTGGGTTTTTGACTCTCCAGCAAATGGTTGATTCATTCATAATATTAATAGCTCAGCAGCCTGACTTAAAGTCCAGTGCTGAAAGTGTAAAGCTTCCTCTTCTAGGTTTCCATGACACTGATTTCTCGTTGAAAATTCCATGGACTCAGTTTAACCCTGCTCACATACGAATAGCTCCATTTCCCACTCGAGAGTACACTGATGACCAGTTCCAATCAATTATAAAGAAAGTCATGGGAATATTTTATTCTGTGTTTGAGAAGGAACAGAAGATCAAAGAAGGACTCTATATGATGGGCCTGAAAGATAGTATATTTCATCTCTCTTGGTTTATTACATATGCTTTGCAGTTTGCAATTTCTTCTGGGGTCATTACAGCTTGTACCATGGATAATTTATTCAAGTATAGTGATAAGACACTGGTGTTTGCATACTTCTTCATTTTTGGGCTAAGTGCAATCATGCTGTCATTTTGTATATCAACNTTTTTCAAACGGGCCAAAACAGCTGTAGCTGTTGGAACTCTGTCTTTTCTTGGGGCTTTTTTCCCTTATTACACAGTCAATGACGAGGGAGTCTCCATGATGTTGAAGGTTATTGCTTCTCTGCTTTCACCTACGGCCTTTGCTCTGGGATCGGTCAACTTTGCTGATTATGAGCGTGCTCATGTTGGACTTCGTTGGAGCAACATATGGCGGGAGTCATCTGGAGTGAACTTTTCTGCATGCCTTCTGATGATGATACTTGATACACTNCTATATTGTGCAATTGGACTGTATTTTGATAAGGTTCTTCCAAGGGAGTATGGACTGCGATATCCATGGAACTTTATTTTCCGAAAGGACTTTTGGAGGAAGAAAAAAATTGTAAATCAATGTTCCTCCAATTTTAAAGTTAAAATTGCTGGTAAGAATTCTGAGTCAGAAGGGAATCTTTTAGGGGAAGATACTTCCAAACCTGCTATAGAAGCAATAAGCTTAGACATGAAACAGCAGGAGCTTGATGGCAGGTGCATTCAAATCAGGAATTTGCATAAAGTGTATGCTACTAAAAAAGGAGATTGCTGTGCTGTTAACTCATTACAGCTGACATTGTATGAAAATCAAATNCTTGCTCTTCTAGGACATAATGGAGCTGGGAAAAGTACNACAATCTCAATGCTTGTTGGTCTTCTTCCTCCTACTTCTGGGGATGCTTTGGTTTTTGGAAAGAACATTGTATCAGATATTGATGAGATACGGAAGGTTTTGGGTGTCTGCCCACAACAGGATATACTGTTTCCTGAATTGACTGTGAGAGAACATTTAGAATTATTTTCCATATTAAAGGGTGTGGAGGAAGACTCATTGGAGGGTGTTGTTACTAATATGGCTGATGAGGTGGGTCTGGCTGATAAAATCAACAGTGTTGTCAGATCTCTTTCTGGTGGCATGAAGAGGAAATTGTCTCTTGGAATTGCATTGATTGGAAACAGTAAGGTTATAATTCTCGATGAACCCACAAGTGGAATGGATCCTTACTCAAAGCGCTTGACTTGGCAGTTAATTAAAAAAATTAAAAAGGGCAGGATAATTTTGCTAACAACACATTCTATGGATGAAGCAGATGAACTAGGTGACCGGATAGCTATCATGGCCAATGGTTCTCTGAAATGCTGTGGAAGCTCCCTTTTCTTGAAGCATCAATATGGAGTTGGTTATACTCTAACTCTTGTGAAGTCAGCTCCTACTGCTTCTATAGCTGGTGATATAGTATACNGTCATGTTCCATCGGCAACCTGTGTAAGCGAGGTTGGAACTGAGATTTCCTTCAGACTTCCTATGGCATCCTCATCAGCCTTTGAGAGAATGTTTAGGGAAATTGAAGGTTGCATGGAAAAACCAGTTCTGAGCATGGAAATTAGTGGCAGTGGTGACAAAGACAGTCNTGGTATTGAAAGCTATGGTATATCTGTAACAACCTTGGAGGAGGTTTTCTTGAGAGTTGCAGGATGTGACTATGATGAAGTTGAATGCTTTAAAGAAAATAACGATTCCCTTATATCTGATTCTGTGGCGTCTATTACTCTTAATGATCATCCATCCACAAAAATGGGTTATCTTGAAGTTTTTGGAAACTATAAAAAGATTCTTGGTTTCATGTCTACCATGGTGGGAAGAGCTTGTGATTTAATTTTTGCTACAGTTATTAGTTTTATCAACTTCATGGGTAGGCAGTGCTGTAGCTGTTGTCTCATTACTAGGTCAACGTTTTGGCAACATTCTAAAGCTTTATTCATTAAGAGGGCAATATCTGCTCGGAGAGATCACAAAACAATTATTTTCCAGCTAATCATTCCTGCTGTCTTCTTGTTTATTGGCCTTCTATTTCTTGAGCTCAAGCCACATCCCGATCAGAAGTCACTGACCCTTTCAACTTCTTATTTTAATCCTCTACTGAGTGGTTGGGGTGGGGGAGGTCCAATTCCGTTTAATCTATCTTTACCAATTGCTGAAAAGGTATCACAAAATGTCAAAGGAGGGTGGATTCAAAGATGCAAGCCAAGCTCATACAAATTCCCCAATTCAGAAAAGGCATTAGCTGATGCAGTGGAAGCAGCAGGGCCAACTCTGGGACCTGCTTTACTTTCAATGAGTGAATATTTGATGTCTAGCTTTAATGAATCCTACCAATCTAGGTATGGGGCAATTGTGATGGATGATCAGAATACTGATGGAAGCTTAGGCTACACTGTATTACACAACTTTTCTTGTCAACANGCTGCTCCCACCTTTATCAATTTGATGAATTCTGCAATTCTTAGGCTTGCTACACATAACATTAATATGACAGTTCAGACACGCAACCACCCTNTACCAATGACACAAAGCCAGCGCTTACAACGTCATGACCTGGATGCCTTCTCGGCTGCTATCATTGTCAATATTGCCTTCTCTTTTATACCTGCCTCGTTTGCTGTTTCAATTGTTAAGGAACGTGAGGTGAAAGCTAAGCACCAACAACTAATCAGTGGGGTTTCAGTCCTTTCATATTGGGCTTCGACATTTATNTGGGACTTTGTGAGCTTCTTGTTTCCGGCCTCGTTTGCCATAGTTCTGTTTTACATCTTTGGTCTGGATCAGTTTGTTGGAGGGGTTTCTTTGTTACCAACGATCCTCATGCTTTTGGAATATGGACTTGCAATTGCATCATCAACTTATTGCCTTACATTTTTCTTTTCTGACCATACCATGGCTCAGAACGTGGTTCTACTAATCCACTTTTTTACTGGATTGATACTAATGGTTATCTCATTCATTATGGGACTCATCCCATCCACAATAAGCGCCAATTCTTTACTCAAGAATTTTTTCAGAATATCTCCTGGATTTTGTTTTGCTGATGGTCTTGCTTCNTTAGCTCTTCTGCGGCAAGGAATGAAAGACAAAACAAGTGATGGAGTGTATGACTGGAATGTTACGGGTGCCTCCATTTGTTATCTTGCTGTCGAGAGCTTTAGTTATTTTTTATTGACACTTGCACTTGAAATTTTCCCTTCTCTCAAATTGACTTTGTTCACGATCAAGAAGTGGTGGGGGAAAATTAATATCTTCCCACATAATACTACTTATCTGGAACCTCTATTAGAATCTTCCCCAGAAACTGTTGTTATGGACCTNGATGAAGATGTGGATGTGAAAACAGAAAGAAATAGGGTACTTTCAGGTTCNATTGACAATGCCATTATCTACTTGCACAATCTTCGTAAGGTGTATTCTGAAGAGAAGAATCATAGGAAAAAGGTTGCGGTAGATTCATTAACCTTCTCAGTTCAGGAAGGAGAATGTTTTGGCTTTTTAGGAACAAATGGAGCTGGAAAGACCACAACAATTTCTATGCTATGCGGGGAAGAATCTCCTTCTGATGGAACTGCTTTCATTTTTGGCAAAGATATATGCTCCCATCCCAAAGCTGCTCATAAATATATTGGATATTGTCCACAATTCGATGCTCTACTGGAATATTTAACTGTCCAAGAGCATCTTGAGCTTTATGCTAGAATAAAAGGTGTTCCAGACTACAGAATAGACAATGTTGTTATGGAAAAGTTGGTGGAGTTTGACTTATTGAAGCATGCTAATAAACCNTCATTTTCACTTAGTGGAGGGAATAAAAGGAAACTGTCTGTTGCAATTGCAATGATTGGAGATCCTCCTATTGTCATTCTTGATGAGCCATCCACAGGTATGGATCCCATTGCTAAAAGGTTCATGTGGGATGTAATATCTAGAATCTCAACTAGACGAGGAAAGACTGCAGTGATTCTTACTACCCACAGCATGAATGAAGCTCAAGCCTTATGTACCAGAATAGGGATTATGGTTGGTGGACGACTAAGATGCATTGGAAGTCCACAGCATCTAAAAACCAGATTTGGGAATCATCTAGAACTAGAGGTAAAACCTACTGAAGTGAGCTCTGTGGACTTACAAGCACTCTGCCAAGCTATTCAAGAATTACTTTTTGATGTCCCTTCTCAACCTAGAAGCTTGCTTAATGACCTTGAAATTTGCATTGGGGGCACTGACTCCATCACCTCAGGAGGTACCTCCATTGCAGAGATTAGCTTGACACGAGAAATGATAGGCTTAATTGGGCGCTGGCTTGGCAACGAAGAAAGAATAAAGACTCTAATGTCCTGTACACCTGTCTATGATGGAGCTTCNCAGGAACAGTTATCAGAACAATTATTTCGAGATGGTGGTATTCCATTGCCAGTATTTTCTGAGTGGTGGTTGTCCAAACAAAAATTCTCAGAAATTAACTCATTTATTCTCTCCTCATTTCGTGGAGCAAGATGCCAGGGGTACAATGGTTTGAGCATCAGATACCAGTTACCATATGATGAGGACTTTTCCCTGGCAGATGTTTTTGGACTTCTTGAAAGAAACAGGTAA

Protein Sequence

>Glyur000019s00002153.1
MGTAWRQLKVMLRKNWLLKIRHPYVTAAEILLPTIVLLLLVAVRTREDTQIHPDQSHIQKDMFVEVGKGISPNFQQVLESLFDKGEYLAFAPDTNETKLMIDVLSIKFPLLKLVSRVYKDEVELETYIRSDAYGACNQXRNCSNPKIKGAVVFYEQGPQSFDYSIRLNHTWAFSGFPDVTTIMDTNGPFLNDLELGVSAVPTMQYSFSGFLTLQQMVDSFIILIAQQPDLKSSAESVKLPLLGFHDTDFSLKIPWTQFNPAHIRIAPFPTREYTDDQFQSIIKKVMGIFYSVFEKEQKIKEGLYMMGLKDSIFHLSWFITYALQFAISSGVITACTMDNLFKYSDKTLVFAYFFIFGLSAIMLSFCISTFFKRAKTAVAVGTLSFLGAFFPYYTVNDEGVSMMLKVIASLLSPTAFALGSVNFADYERAHVGLRWSNIWRESSGVNFSACLLMMILDTLLYCAIGLYFDKVLPREYGLRYPWNFIFRKDFWRKKKIVNQCSSNFKVKIAGKNSESEGNLLGEDTSKPAIEAISLDMKQQELDGRCIQIRNLHKVYATKKGDCCAVNSLQLTLYENQXLALLGHNGAGKSTTISMLVGLLPPTSGDALVFGKNIVSDIDEIRKVLGVCPQQDILFPELTVREHLELFSILKGVEEDSLEGVVTNMADEVGLADKINSVVRSLSGGMKRKLSLGIALIGNSKVIILDEPTSGMDPYSKRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAPTASIAGDIVYXHVPSATCVSEVGTEISFRLPMASSSAFERMFREIEGCMEKPVLSMEISGSGDKDSXGIESYGISVTTLEEVFLRVAGCDYDEVECFKENNDSLISDSVASITLNDHPSTKMGYLEVFGNYKKILGFMSTMVGRACDLIFATVISFINFMGRQCCSCCLITRSTFWQHSKALFIKRAISARRDHKTIIFQLIIPAVFLFIGLLFLELKPHPDQKSLTLSTSYFNPLLSGWGGGGPIPFNLSLPIAEKVSQNVKGGWIQRCKPSSYKFPNSEKALADAVEAAGPTLGPALLSMSEYLMSSFNESYQSRYGAIVMDDQNTDGSLGYTVLHNFSCQXAAPTFINLMNSAILRLATHNINMTVQTRNHPXPMTQSQRLQRHDLDAFSAAIIVNIAFSFIPASFAVSIVKEREVKAKHQQLISGVSVLSYWASTFXWDFVSFLFPASFAIVLFYIFGLDQFVGGVSLLPTILMLLEYGLAIASSTYCLTFFFSDHTMAQNVVLLIHFFTGLILMVISFIMGLIPSTISANSLLKNFFRISPGFCFADGLASLALLRQGMKDKTSDGVYDWNVTGASICYLAVESFSYFLLTLALEIFPSLKLTLFTIKKWWGKINIFPHNTTYLEPLLESSPETVVMDLDEDVDVKTERNRVLSGSIDNAIIYLHNLRKVYSEEKNHRKKVAVDSLTFSVQEGECFGFLGTNGAGKTTTISMLCGEESPSDGTAFIFGKDICSHPKAAHKYIGYCPQFDALLEYLTVQEHLELYARIKGVPDYRIDNVVMEKLVEFDLLKHANKPSFSLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWDVISRISTRRGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHLKTRFGNHLELEVKPTEVSSVDLQALCQAIQELLFDVPSQPRSLLNDLEICIGGTDSITSGGTSIAEISLTREMIGLIGRWLGNEERIKTLMSCTPVYDGASQEQLSEQLFRDGGIPLPVFSEWWLSKQKFSEINSFILSSFRGARCQGYNGLSIRYQLPYDEDFSLADVFGLLERNR

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00019	407285	431334	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000019s00002153.1	PF12698.2	ABC2_membrane_3	288	466	4.80E-18
Glyur000019s00002153.1	PF00005.22	ABC_tran	566	709	3.80E-29
Glyur000019s00002153.1	PF12698.2	ABC2_membrane_3	978	1380	5.80E-36
Glyur000019s00002153.1	PF00005.22	ABC_tran	1472	1614	2.50E-24
Glyur000019s00002153.2	PF12698.2	ABC2_membrane_3	288	466	4.70E-18
Glyur000019s00002153.2	PF00005.22	ABC_tran	566	709	3.70E-29
Glyur000019s00002153.2	PF12698.2	ABC2_membrane_3	978	1287	6.10E-26
Glyur000019s00002153.2	PF00005.22	ABC_tran	1437	1579	2.50E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.663
SRR1783600	control	16.743
SRR1783602	moderate drought stress	24.045
SRR1811619	moderate drought stress	23.799

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.401
DRR006520	Root Summer glycyrrhizin high producing strain	12.177
DRR006521	Root Winter glycyrrhizin high producing strain	24.029
DRR006522	Root Winter glycyrrhizin high producing strain	23.605
DRR006523	Root Summer glycyrrhizin low producing strain	12.205
DRR006524	Root Summer glycyrrhizin low producing strain	12.122
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.272
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.197

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.690
SRR2868004	Drought Stress (root)	53.419
SRR2967015	Control (root)	65.115

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.127
SRR9715740	Leaf	14.614
SRR9715741	Leaf	23.098
SRR9715739	Root	5.340
SRR9715742	Root	36.852
SRR9715743	Root	32.210

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.873
SRR8749028	MeJA induced 9h	42.673
SRR8749029	MeJA induced 9h	20.994
SRR8749030	Uninduced	50.316
SRR8749031	Uninduced	71.394
SRR8749032	Uninduced	49.494

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	45.682
SRR8400027	Control - Root	36.761