Gene detail information of Glyur000019s00002151.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G57000.1 | 5.00E-50 | nucleolar essential protein-related |
| NR | XP_007226721.1 | 5.59E-80 | hypothetical protein PRUPE_ppa019713mg, partial [Prunus persica] |
| COG | YP_008797271.1 | 1.00E-08 | ribosome biogenesis protein [Candidatus Caldiarchaeum subterraneum] |
| trEMBL | tr|M5Y7H9|M5Y7H9_PRUPE | 2.00E-80 | Uncharacterized protein {ECO:0000313|EMBL:EMJ27920.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00019 | 394421 | 399516 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K14568 | EMG1, NEP1 | EC:2.1.1.260 | Ribosome biogenesis in eukaryotes | map03008 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000019s00002151.1 | PF03587.9 | EMG1 | 61 | 227 | 2.80E-41 |
| Glyur000019s00002151.1 | PF03587.9 | EMG1 | 250 | 409 | 2.30E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.262 |
| SRR1783600 | control | 3.249 |
| SRR1783602 | moderate drought stress | 3.893 |
| SRR1811619 | moderate drought stress | 3.892 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.624 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.072 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.519 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.464 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.435 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.839 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.234 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.118 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.775 |
| SRR2868004 | Drought Stress (root) | 5.659 |
| SRR2967015 | Control (root) | 5.600 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.433 |
| SRR9715740 | Leaf | 3.667 |
| SRR9715741 | Leaf | 3.621 |
| SRR9715739 | Root | 1.833 |
| SRR9715742 | Root | 5.098 |
| SRR9715743 | Root | 5.557 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.487 |
| SRR8749028 | MeJA induced 9h | 6.746 |
| SRR8749029 | MeJA induced 9h | 7.309 |
| SRR8749030 | Uninduced | 0.928 |
| SRR8749031 | Uninduced | 0.754 |
| SRR8749032 | Uninduced | 0.777 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.661 |
| SRR8400027 | Control - Root | 9.085 |