Gene detail

Gene detail information of Glyur000019s00002150

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G57000.1	3.00E-64	nucleolar essential protein-related
NR	KEH28098.1	1.52E-99	EMG1/NEP1 methyltransferase [Medicago truncatula]
COG	YP_003483286.1	7.00E-09	Suppressor Mra1 family protein [Aciduliprofundum boonei T469]
trEMBL	tr\|A0A072UG33\|A0A072UG33_MEDTR	6.00E-100	EMG1/NEP1 methyltransferase {ECO:0000313\|EMBL:KEH28098.1}

Sequence

Transcript Sequence

>Glyur000019s00002150.1
ATGAGGGGACTCATCCCAGAAGAAGCAATGGGAAAAGATGGTTTTGTGAACGGTTATAAGTGGAGGAGAGTGGTGAAACAAAACTTACCTTTTGTGACCAGAGGGAACAGAGGAGGACACGGCGGTGCGGCAGGATGCGGCGGTGCAGAGGTGTGGGGAGCCGCCCCTGCCCTGCAGCGAACGAAAGCGGCATCCTCATATTTTTCGTTTCTTCCATCGCCGGCGGCCAGCCATCACTGTCCCATTCCCGTCGCACCGCACCCAGTAGCGCCAGAGAATCATCCTCAACCGCACCGAACACTCGCGGGTCGCTGTCGCTGTCGCTGTCGCTGTCGCAACGCCCTCTACCGGAGTTATCATCGCCGTTGCCAGAGCTACCTCATTGAGACTATGCTTTCAACACGGGATCAAGCAATAGGGGATGAAGAGAATGATAATTCAGTGGTAGAACTTCCCGGAATCCCACTGGCACCTCGCAGACAGAGCTCAAAAGATGGAGTGTATTTCATTCTTGAGAAAGCCTCACTGGTTGCTGCTTATGTTGGCAAAAAATACCAGATTTTGAATCCAGAGGAGCATGGTAGTTTCTTGCGGAAGAAAAATAAGAATCCTTATGATTTTAGGCCTGATATTGTTCATGAGGCTCTCCTTCAAATTATGAGTAGTCGGCTTCGCATGGCTGGTAGAATACGCGCTGTATTCATCAGGACTGATGAAGGAATTCTTATCAGAGTTGAACCACAAACACAGATACCAAAAACTCTGGGAAGCTTTTGTAATATGATGGCGGAGTTGCTGCAAAATTTCAGTATCAAGTCAAAGGGTAATCAGGGAAAGCTTTTAAGGTTAATTAAAAACCCTGTGACTCAACACTTACCTGTCAANTCGCGTAAAATAGGTCTTTCTTTTAGTTCGCCAAAGACAGTCCAAATAAGGGACTTTACTGCTGCTAACTGTGATGAGAACCTTGTATTTGTGGTTGGGGCAATGGCTCATGGAAAAATTGATGCTGACTACATTGATGATCTCATATCAGTTTCATCTTATCCACTAAGTGCTGCGACTTGTCTTAGACGGATCTGCATTGCGTTAGAGAGAAATTGGAAGATCATGTAAATGTTATCGAAAATATATCCTTTTATAACTAGTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00019	389584	394221	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14568	EMG1, NEP1	EC:2.1.1.260	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000019s00002150.1	PF03587.9	EMG1	169	365	3.60E-53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.977
SRR1783600	control	3.447
SRR1783602	moderate drought stress	3.779
SRR1811619	moderate drought stress	3.879

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.535
DRR006520	Root Summer glycyrrhizin high producing strain	8.754
DRR006521	Root Winter glycyrrhizin high producing strain	15.001
DRR006522	Root Winter glycyrrhizin high producing strain	13.836
DRR006523	Root Summer glycyrrhizin low producing strain	4.088
DRR006524	Root Summer glycyrrhizin low producing strain	4.400
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.462
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.702

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.616
SRR2868004	Drought Stress (root)	10.361
SRR2967015	Control (root)	7.760

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.195
SRR9715740	Leaf	5.839
SRR9715741	Leaf	6.833
SRR9715739	Root	6.249
SRR9715742	Root	10.436
SRR9715743	Root	8.395

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.854
SRR8749028	MeJA induced 9h	7.331
SRR8749029	MeJA induced 9h	8.837
SRR8749030	Uninduced	1.254
SRR8749031	Uninduced	1.588
SRR8749032	Uninduced	1.764

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.538
SRR8400027	Control - Root	11.147