Gene detail

Gene detail information of Glyur000019s00002145

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G10310.1	P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain
NR	KEH23620.1	kinesin motor catalytic domain protein [Medicago truncatula]
Swissprot	tr\|O81635\|ATK4_ARATH	Kinesin-4
trEMBL	tr\|A0A072UCN2\|A0A072UCN2_MEDTR	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}

Sequence

Transcript Sequence

>Glyur000019s00002145.1
GAACCAAGATTTGGGTTTGTTGATGATCATGGAGGATTGTTCAAGAAAAGGGGTTCATGATTTCAACATGGCTTCAAGGAAAGCTGAGGAAGCGGCTTGGAGACGTTATGAGGCAACTGANTGGCTAGAAAGCCAAGTGGGTCCTCTTGGCATATCCAACCAACCCACAGAGAGAGAGCTTATTTCTTGCTTGAGAAATGGTCTCATTCTTTGCAAGGCCATTAACAAGATCCATCCAGGAGCAGTGCCCAAGGTTGTGGATAATCAAGTAGCTGCACAATCATTTACCTGGGATTCCCAGCCTTTGCCTGCCTATCAGTATTTTGAAAATGTCCGCAACTTTCTGGTTGCTGCTGAAGAATTAAAGCTTCCAGCTTTCGAAGCTTCTGATCTAGAAAGGGATAGTGTGGAGAATGGNTCAGCAGCAAAAGTTGTTGATTGCATTCTATCACTTAAATCGTTTCAAGAGTTGAAGCAGATGAACAATCAGAGTGGATCCAAAAGACACATAAAATCTCCTTTACTTATGCAGTCAGCCAGTAGAATGCATTCAAGAGCCACAGCTGNAACTCCCTCTGATGCATGTAGGCGCTTGGAGTTGTCTGCCACATTGGAAAAAACTCCTTCTGTTGAGAGTAATTTTCAGAAACGAGAAGCAGAAATTGTGGAATCACTTGTCAAGCTCCTAGTTGACCGTATGTTTGATGCCAAAGAAAACATTGATGGAGAAATTATTGCTTCTCTTCATAGTGGAGACATGGATCCAATCAACCTATTTAATCAGATTGTGACTAGTTGTTGTGGGGAACAACCACCTATGAAGTTCCCTGAGTTGCCACTAAAGAATTCTATAAAAGGTTCCACAGAATCAGATGCTTTCTCTGCACCTGAAAGTTCCAAGTGTTACAGAGCTTGCCCTGGAAAGTGCACTTGCAATCAGAAGCATCTCCTAGACATACAAGAAAAAGAACTTCTGGATCTCAAGTCTTTGAAGTTGAAGATTAAGAATGAGTTTGAAGAGATGCAGTCACAGTTTCAGAGATTTTTTAATGATATAGGAATTCAAGTAAAGGACATGTCAACCAAAGCCCTTGGGTATCACAAAATAGTNGAAGAGAACAGGAAACTATTCAACATGGTCCAAGATTTGAAAGGCAATATTCGAGTTTACTGTAGGATCAGACCCTCATTNAGGGCTGAATCCAAGAATGTTGTTGATTTCATTGGGGAAGACGGTTCTCTATTCATTTTAGATCCAACAAAAACACTAAAAGATGGAAGAAAACTTTTCCAGTTTAATCGGGTTTTCGGTCCAGCAGCTGGCCAAGATGAGNTTTATAAGGACACTCAACCATTAATTAGATCAGTGATGGATGGATACAATGTTTGCATTTTTGCTTATGGTCAAACTGGATCTGGGAAGACTCACACCATGAGTGGTCCTTCGGGTGGAACATCTAAGAATATGGGGATCAATTATCTCGCTCTTAATGATTTGTTTCACATGTCTAATGAAAGGAAGGACATTGTAAAGTATGACATTTATGTCCAAATGGTTGAGATTTATAATGAACAAGTAAGAGACCTACTTGCAGAGGACAAAACAGACAACAAATATCCTTTTCTTTGTCGATTTAAATCCTTAACTAATCTCAAATTAGAGATCAGAAGTTGCAATGATGATGGGTTGAGCCTTCCTGATGCTAGATTGCGTTCAGTGAAGTCTACAACTGATGTCATGACCCTCATGAAACTCGGCGAGGTTAATCGCGCTGTCAGTTCTACTGCAATCAACAATAGGAGTAGCCGTTCCCACAGTGTACTTACTGTGCATATTCATGGCAAAGATACATCCGGGAACTCCATCCGCAGTTGCCTGCATTTGGTAGACCTCGCTGGAAGCGAAAGAGTAGACAAGTCTGAAGTTACAGGAGAAAGACTAAAGGAAGCACAATTCATTAACAAGTCTCTTTCCTGTTTGGGAGATGTGATCACAGCCCTGGCACAGAAGAATTCTCACATTCCTTACAGGAACAGCAAACTCACACTTCTTTTGCAGGACTCCTTAGGTGGACATGCTAAAACGTTGATGTTTGCTCATGTGAGTCCGGAAGCGGATTCCTTTGGTGAAACAATGAGTACTTTGAAGTTTGCTCAGCGGGTTTCCACTGTGGAACTCGGGGTAGCTCGTTTGAACAAAGAAAGCAGTGAGGTTATGCAACTTAAAGAACAGGTTGAGAACCTCAAGACTGCATTGGCAAATAAGGAAAATCTGAAAGCAATGTTCAATAGAACTAAAGAACCTTACACTCCATTAGAGAAGACTCCGCTGCGCCCTCGAAGACTTAGCATTGAGAATTGCAGCACCATAAAGACTGACAAACCTGTGAATCCAGAGGATAAAACTGGTTCCAAATCACCNTTACCTCGTTCGAGAAGATTAAGCTTGGAAGGTGCAAGAACTATCAAGAAAGACCATAATCTACAACCAAAAGTATCAGCTGAACCAGAAGCAGTGTCAAAGCTAAATGGCCAATTCAAGTTAGAGTTGCAGGCCAAAACTCCTCTAAGTCCTACAAAAACTACNCATCAAAAGAGGTTGATTAAAGTTGATAGCAGGATCCAAATTCACCCTCTTAAACTACCCCAATCACCTGAACCACCAGTGCTAGATAAAAATGACCATGCATTTTGCACTGATACAAATTCCCTGACAACAAAGGTGAGCGGTAGTACAAATGGGAAAGGATCTCAGATAAGAAGATCCTTGAGAACAATTGGAAAACTGATAAATGGCCCTGATAAGAGGAGCCAACAAATTATGGTTGAAGTGAAGTCACCTATCAAGGGCACTGGTCATACAAATCAAATGACAAGGACAGAAATGCCAGAACGCCTCCTCCTTCAGGCACCAAGACTTCAAAACGGTGGATGTAGATCAATGGGGTGCTTTGACTCGAAGCACCACACCAACAAGGCTGACTCTAGTTTAGGACAAGCTTCCAATTTTGTTTTCAGATCAATAAATAAATCGAAAGGAATATTCAGTGCAAATTACCACAAAGCACTTATGAACCAACGATTTAGT

Protein Sequence

>Glyur000019s00002145.1
MIMEDCSRKGVHDFNMASRKAEEAAWRRYEATXWLESQVGPLGISNQPTERELISCLRNGLILCKAINKIHPGAVPKVVDNQVAAQSFTWDSQPLPAYQYFENVRNFLVAAEELKLPAFEASDLERDSVENGSAAKVVDCILSLKSFQELKQMNNQSGSKRHIKSPLLMQSASRMHSRATAXTPSDACRRLELSATLEKTPSVESNFQKREAEIVESLVKLLVDRMFDAKENIDGEIIASLHSGDMDPINLFNQIVTSCCGEQPPMKFPELPLKNSIKGSTESDAFSAPESSKCYRACPGKCTCNQKHLLDIQEKELLDLKSLKLKIKNEFEEMQSQFQRFFNDIGIQVKDMSTKALGYHKIVEENRKLFNMVQDLKGNIRVYCRIRPSXRAESKNVVDFIGEDGSLFILDPTKTLKDGRKLFQFNRVFGPAAGQDEXYKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMSGPSGGTSKNMGINYLALNDLFHMSNERKDIVKYDIYVQMVEIYNEQVRDLLAEDKTDNKYPFLCRFKSLTNLKLEIRSCNDDGLSLPDARLRSVKSTTDVMTLMKLGEVNRAVSSTAINNRSSRSHSVLTVHIHGKDTSGNSIRSCLHLVDLAGSERVDKSEVTGERLKEAQFINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGHAKTLMFAHVSPEADSFGETMSTLKFAQRVSTVELGVARLNKESSEVMQLKEQVENLKTALANKENLKAMFNRTKEPYTPLEKTPLRPRRLSIENCSTIKTDKPVNPEDKTGSKSPLPRSRRLSLEGARTIKKDHNLQPKVSAEPEAVSKLNGQFKLELQAKTPLSPTKTTHQKRLIKVDSRIQIHPLKLPQSPEPPVLDKNDHAFCTDTNSLTTKVSGSTNGKGSQIRRSLRTIGKLINGPDKRSQQIMVEVKSPIKGTGHTNQMTRTEMPERLLLQAPRLQNGGCRSMGCFDSKHHTNKADSSLGQASNFVFRSINKSKGIFSANYHKALMNQRFS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00019	365349	372441	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007018 microtubule-based movement

cellular_component
GO:0005871 kinesin complex

molecular_function

GO:0003777 microtubule motor activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0008017 microtubule binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000019s00002145.1	PF00307.26	CH	30	147	3.20E-09
Glyur000019s00002145.1	PF00225.18	Kinesin	385	716	1.90E-102

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.553
SRR1783600	control	0.527
SRR1783602	moderate drought stress	0.633
SRR1811619	moderate drought stress	0.573

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.883
DRR006520	Root Summer glycyrrhizin high producing strain	0.898
DRR006521	Root Winter glycyrrhizin high producing strain	0.217
DRR006522	Root Winter glycyrrhizin high producing strain	0.282
DRR006523	Root Summer glycyrrhizin low producing strain	0.875
DRR006524	Root Summer glycyrrhizin low producing strain	0.749
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.311
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.260

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.836
SRR2868004	Drought Stress (root)	1.714
SRR2967015	Control (root)	2.388

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.825
SRR9715740	Leaf	0.178
SRR9715741	Leaf	0.497
SRR9715739	Root	0.008
SRR9715742	Root	0.488
SRR9715743	Root	0.312

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.779
SRR8749028	MeJA induced 9h	3.824
SRR8749029	MeJA induced 9h	3.788
SRR8749030	Uninduced	0.021
SRR8749031	Uninduced	0.092
SRR8749032	Uninduced	0.183

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.745
SRR8400027	Control - Root	1.738