Gene detail information of Glyur000019s00002144 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G57380.1 | 1.00E-131 | Glycosyltransferase family 61 protein |
| NR | CDY23839.1 | 2.15E-178 | BnaC04g01980D [Brassica napus] |
| trEMBL | tr|A0A078GET5|A0A078GET5_BRANA | 8.00E-179 | BnaC04g01980D protein {ECO:0000313|EMBL:CDY23839.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00019 | 353074 | 362647 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT61 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000019s00002144.1 | PF04577.9 | DUF563 | 290 | 373 | 2.40E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.472 |
| SRR1783600 | control | 4.686 |
| SRR1783602 | moderate drought stress | 13.516 |
| SRR1811619 | moderate drought stress | 13.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 28.409 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.612 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.297 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.509 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 128.581 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 129.905 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.512 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.375 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.641 |
| SRR2868004 | Drought Stress (root) | 9.522 |
| SRR2967015 | Control (root) | 7.644 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 30.372 |
| SRR9715740 | Leaf | 34.404 |
| SRR9715741 | Leaf | 31.929 |
| SRR9715739 | Root | 21.014 |
| SRR9715742 | Root | 57.955 |
| SRR9715743 | Root | 49.072 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 113.346 |
| SRR8749028 | MeJA induced 9h | 180.591 |
| SRR8749029 | MeJA induced 9h | 135.758 |
| SRR8749030 | Uninduced | 170.577 |
| SRR8749031 | Uninduced | 140.946 |
| SRR8749032 | Uninduced | 110.666 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.430 |
| SRR8400027 | Control - Root | 10.279 |