Gene detail information of Glyur000019s00002139 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G14470.1 | 3.00E-83 | NB-ARC domain-containing disease resistance protein |
| NR | XP_003553414.1 | 0 | PREDICTED: disease resistance protein RGA2-like [Glycine max] |
| COG | YP_007146276.1 | 5.00E-08 | Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum stagnale PCC 7417] |
| Swissprot | tr|Q7XA39|RGA4_SOLBU | 3.00E-114 | Putative disease resistance protein RGA4 |
| trEMBL | tr|I1N909|I1N909_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G32110.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00019 | 324117 | 327508 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000019s00002139.1 | PF00931.17 | NB-ARC | 171 | 465 | 7.80E-62 |
| Glyur000019s00002139.1 | PF12799.2 | LRR_4 | 580 | 615 | 1.20E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.779 |
| SRR1783600 | control | 0.772 |
| SRR1783602 | moderate drought stress | 0.616 |
| SRR1811619 | moderate drought stress | 0.633 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.195 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.160 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.072 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.045 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.035 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.034 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.289 |
| SRR2868004 | Drought Stress (root) | 17.087 |
| SRR2967015 | Control (root) | 9.961 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.169 |
| SRR9715740 | Leaf | 0.351 |
| SRR9715741 | Leaf | 0.483 |
| SRR9715739 | Root | 0.294 |
| SRR9715742 | Root | 0.557 |
| SRR9715743 | Root | 0.611 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.776 |
| SRR8749028 | MeJA induced 9h | 4.415 |
| SRR8749029 | MeJA induced 9h | 2.986 |
| SRR8749030 | Uninduced | 7.821 |
| SRR8749031 | Uninduced | 11.303 |
| SRR8749032 | Uninduced | 3.717 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.475 |
| SRR8400027 | Control - Root | 2.790 |