Gene detail information of Glyur000019s00002129 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G57360.1 | 1.00E-47 | |
| NR | XP_004493470.1 | 4.76E-140 | PREDICTED: tRNA-splicing endonuclease subunit Sen54-like isoform X4 [Cicer arietinum] |
| trEMBL | tr|A0A072TTP9|A0A072TTP9_MEDTR | 3.00E-131 | tRNA-splicing endonuclease subunit sen54 amino-terminal protein {ECO:0000313|EMBL:KEH20812.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00019 | 279059 | 281656 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.283 |
| SRR1783600 | control | 1.678 |
| SRR1783602 | moderate drought stress | 1.063 |
| SRR1811619 | moderate drought stress | 0.928 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.441 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.608 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.056 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.362 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.527 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.690 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.714 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.561 |
| SRR2868004 | Drought Stress (root) | 4.571 |
| SRR2967015 | Control (root) | 5.875 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.258 |
| SRR9715740 | Leaf | 3.165 |
| SRR9715741 | Leaf | 2.736 |
| SRR9715739 | Root | 0.987 |
| SRR9715742 | Root | 1.593 |
| SRR9715743 | Root | 1.111 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.387 |
| SRR8749028 | MeJA induced 9h | 1.840 |
| SRR8749029 | MeJA induced 9h | 1.460 |
| SRR8749030 | Uninduced | 1.009 |
| SRR8749031 | Uninduced | 0.663 |
| SRR8749032 | Uninduced | 0.737 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.732 |
| SRR8400027 | Control - Root | 4.436 |