Gene detail

Gene detail information of Glyur000019s00002118.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G41510.1	0	cytokinin oxidase/dehydrogenase 1
NR	XP_004493454.1	0	PREDICTED: cytokinin dehydrogenase 1-like [Cicer arietinum]
COG	YP_007093170.1	4.00E-70	FAD linked oxidase domain-containing protein [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|O22213\|CKX1_ARATH	0	Cytokinin dehydrogenase 1 (Precursor)
trEMBL	tr\|G7KSL8\|G7KSL8_MEDTR	0	Cytokinin oxidase/dehydrogenase-like protein {ECO:0000313\|EMBL:AES81318.1}

Sequence

Transcript Sequence

>Glyur000019s00002118.1
ATGGTATTAAAACTTGCTGGTTTCTCTAAACATGGGAACTTTTCATTCATCACAATCTTCATACTTGAAATAATCCTTAATTTTACACCTCACAGAGCTGACTCNGGCTGCAACAACAACAACAACTCTGTTGTTGTCACTTCAGTAGTTCCATTTCCACCCCAAGAAGTCCTCTCATCAATACAATCACTACCCCTTGATGGCCTCTTGAGCCTAAGGAACAATGANGATGCTGCCAAGGACTTTGGCAACATATACCATTTCCCCCCTCTAGCAGTGCTGCATCCAAAAACAGTTTCAGATATTTCATGCACCATAAGACACATATTTGAAATGGGGTCTGCTTCAGAGTTGAAGGTTGCTGCTAGAGGCCATGGGCATTCCCTTAAAGGCCAGGCACAAGCACATCAAGGACTAGTCATCAGCATGGAGTCACTGCAGGGTCCTGAAATGAAAGTCCACAGTGGTGGTGAGTCTCCTTACGTGGATGTCTCAGGGGGTGAGTTGTGGATAAACATTCTGCATGAAACTCTTAGACATGGTTTGGCACCAAAGTCTTGGACAGATTACCTTCATCTCACTGTTGGGGGCACCCTTTCAAATGCTGGAATTAGTGGACAAGCCTTTAGGCATGGACCCCAGATCAATAACATCTTCCAGTTGGAAGTGGTCACAGGAAAAGGAGAGGTGGTTACCTGCTCGGCGAACCGAAATGCTGAACTTTTTTATGGTGTTCTTGGAGGGCTTGGTCAATTTGGCATCATCACCAGGGCTAGAATTTCTCTTCAACCAGCACCTAAGATGGTGAAATGGATTAGGGTGCTCTACTCAGAATTCTCTATTTTTGCCAGTGATCAAGAGTATTTGATATCACTTAAAAACACTTTTGATTATGTTGAAGGATTTGTAATCAAAAATAGAACTGGCATCCTTGACAATTGGAGATCATCTTTTGACCCCAAAGACCCATTTCAAGCTAGCCAATTCAATTCAGATGGAAGGACATTCTACTGTCTTGAGATGGCAAAATACTTTAACCCAGATGAAGCTGAAGTCATGAATCACAGTGTTGATCACCTACTGTCACAGCTGAGTTATATTCCACCCACACTCTTCCTATCAGAAGTTTCTTACGTGGAATTCCTAGACAGAGTGCATGTTTCTGAGAAAAAACTAAGAGCAAAAGGCTTATGGGAAGTTCCCCATCCTTGGCTGAACCTTCTGGTCCCAAGGAGTGAGATTCATGACTTTGCTGAAGAGGAAGATGTTTTCTACCTGGTGGCATTCCTATCATCTGCAGTCCCATTTTCTACTGGTGCAAACAGTTTAGAATACCTTCTGAACCAAAACAAAAGGGTCCTAGATTTCTGCAAACATGCCCAACTCGGTGTGAAGCAATATCTTCCACACTACAGCACACAGGAAGAATGGCAAGCCCATTTTGGGTCAAGATGGGGGGCATTTGTGGAAAGGAAAAGAGCCTATGACCCACTGACACTGCTTGCCCCTGGTCATAGAATCTTTCAAAAGGCAATGTCTACCACCACCTCCTCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00019	216318	218745	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00279	CKX	EC:1.5.99.12	Zeatin biosynthesis	map00908

Gene Ontology

biological_process

GO:0009690 cytokinin metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0008762 UDP-N-acetylmuramate dehydrogenase activity

GO:0016491 oxidoreductase activity

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0019139 cytokinin dehydrogenase activity

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000019s00002118.1	PF01565.18	FAD_binding_4	90	234	1.10E-21
Glyur000019s00002118.1	PF09265.5	Cytokin-bind	266	419	1.20E-57

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.526
SRR1783600	control	0.595
SRR1783602	moderate drought stress	0.115
SRR1811619	moderate drought stress	0.088

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.069
DRR006520	Root Summer glycyrrhizin high producing strain	0.068
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.702
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.759

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.349
SRR2868004	Drought Stress (root)	1.414
SRR2967015	Control (root)	0.312

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.153
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.064
SRR9715739	Root	0.000
SRR9715742	Root	0.396
SRR9715743	Root	0.275

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.046
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.027
SRR8749030	Uninduced	0.058
SRR8749031	Uninduced	0.059
SRR8749032	Uninduced	0.013

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.141
SRR8400027	Control - Root	0.792