Gene detail

Gene detail information of Glyur000019s00002105

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G36930.1	2.00E-61	Disease resistance protein (TIR-NBS-LRR class) family
NR	ABD33309.1	8.74E-166	Ribonuclease H [Medicago truncatula]
Swissprot	tr\|Q40392\|TMVRN_NICGU	3.00E-59	TMV resistance protein N
trEMBL	tr\|Q2HRG4\|Q2HRG4_MEDTR	3.00E-166	Ribonuclease H {ECO:0000313\|EMBL:ABD33309.1}

Sequence

Transcript Sequence

>Glyur000019s00002105.1
GTTATTATCACCTTTAACGACAAAAATGTCCGTTCAGGGAATTAAATTTTCATTATAAGATTTGATGTGTAGTAGAGTGGGTAGTAGAGTGGTTAGTTGAAAGTTCAACAACTTGAATAGCAATCGTCAACTATGCGCGAGACAGAAATCGTGAAACGGTGAAAGCGAGATAGAGAAAGAGAGCTCAGAGCAGAGAAGAAGAAAGTGCTGTCTGTAATGTGATTCCTCGTAATCGATGGCAGTGGCGAGCGAAGCACCGGCGTGGAAGTTCCACGTGTTCCTGAGTTTCNGAGGAGAGGAAACCCGCAACAAATTCACCGACCACCTATACGCAGCGTTTTGGAGAAGCGGCTTCGCGGTTTTCAAAGACGACACTGAACTCAAGAGAGGGGAAGCGATAGCGCCGGAGCTACTGAAGGCGATCGAGGAATCGCTGTGTTCGGTGGTGGTTCTGTCTCCCGACTACGCTTCCTCGCGGTGGTGCCTTGACGAGCTCCTCCACATCCTCCGATCTCGAACCGAATTCGGTCGCCACGTTTTCCCTGTCTTCTACGATGTGGATCCCTCCGATGTGAGGCACCAGCGAGGTTCCTTCGCTGAGGCTTTCGTGAAGCATGGGGAAAGGTTTGGAGGTGAGAGTGAAAAGGTTCGGAAGTGGAAAGACGCCTTGACTGCGGTTGCTGACTTCTCTGGCTGGACCTCCAAGGATCGGCGTGAAACAGAACTCATTGAAGAAATTGTTGCAGAAGTATGGAAAAGGTTACAACNTAAATTGCCTTACTATGATGATGAACTGGTTGGAATTGATTCAAGGATAAACAACATTTATTCACTTTTAAGGACAGAGTCAGAGGAAGTTCGCTTTGTGGGGATATGGGGAATGGGTGGCATAGGAAAGACAACTCTAGCCAAATTTGTCTACAAGAAAATCCATGATCAATTTGATATCAGTTGCTTTCTTGAGAATGTTAGAGAGGTTGCTAGTGAAAGAGATGGTCTGCTTTGTTTACAAAGAAAATTGCTTTCTCATCTAAAAATTAGCAGCATGAGAACTTCCATAGCTGAACTACCTCCAACTGTTGGTTACTTGACAGGTCTTAATAGCTTGCTTTTACGGGACTGTAAAAATNTTGTTTCCCTTCCAAACACCTTTTCTAATTTGAAATCTCTCAGAAGGCTCAATGTCTCTGGTTGCTCAAAATTTTCTAAGCTGCCAGATAATTTGAATGAAAATGAGGCTTTGGAGTGTCTCAATGTGAGTGAGACTGCTATAAGGGAAGTGCCTTCATCCATTTCATTGCCTAAGCTGCCACCAAATGTACATTATGTAAATGCAAGTGATTGTGCTTCAATGAAACCCTTATCAGATCCACAACAGATATGGGGTCACTTGGGATCGTTTGCCTTTGATAAGTTGCAAGACGAGAATCAGCTCAAAACTTTATTGGTAAGTCCAGGAAACGAAATTCCATCCACTTTTTTCTATCAAAATTATTTTGACCGGGACATACAATATNTAAAAGACAACTACATTTGGGCTGATTCTACTGTGTCAATATCAATGGACTTAGCTCAACTTCACCATCGGTATGATAGAAGTGAGTGGTGGGGAATTTTGGTTTGCCTNGTCATAGAAGATGTGGTGTCTTCACCTTCTCGGGACTATCGTGTTGGTTGGATTTCAAAAGTTCCTACCATCAATAATATTTTGCATCAGCAATGTCACAAGTTGTTAGAGCATGGATTCATTTCAGGAATACCAAATCATGCTGAAGTCTGGCGCAGAAAACTGTCTGAGTGCAACACTTCTTCTGCCAATCAATGTGTTCCCCGAAACAATTGCTTATCTTCCTCTCCTTTTGCATCTTGGNGATGGATAAGTAATCTCAAGGTTCCCCAAAATCGCAAGACTTTCCTCTTGGCAATCCTCTGTGATCGCTTGCCTTCTATTGCAAGGTGCAGGTTCTGCAGCTTGGAAGGGGCTACCNCCATCCATGTTTTAAGAGATTGTAGGCGAGCTTGTGCAATCTGGAGTCAAATGGTTCCTCCTGAAGTGCATGATGAGTTTTTTTCANTGTCTCTTCATGATTGGATGCATAGGTTCCTTCGTAAACCCTGGTTGCCAAATAACTGTGGGGACTATGATGTTGACTGCTTGAGGTTTACTGTCACCACTTCGCTCCTCTGGAAGGATGGAAATAATTCTATCCCTGAGGGAGGTTCTCTAACAGATGATGGGTTGTTTTCTATGATTCAGTCTCTAGTACAAGAATATGCAAGGGTTTTGCACCTGAACAAGGAAGAGGATAGTGCCTGTGCAGACATTTTATCGAAACTTGGAGCTGAGCAGCATGAGCTCTATTGCTTCCTGGCTTATCCACCACAGCAGCTTCAGATGGCATTGATGGCTGATGCCCTGAATGTTCAACTTCCTTGCCTCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00019	128443	134615	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000019s00002105.1	PF01582.15	TIR	14	146	2.20E-33
Glyur000019s00002105.1	PF00931.17	NB-ARC	191	270	3.50E-12
Glyur000019s00002105.2	PF01582.15	TIR	14	146	2.40E-33
Glyur000019s00002105.2	PF00931.17	NB-ARC	191	270	3.80E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.118
SRR1783600	control	3.112
SRR1783602	moderate drought stress	3.087
SRR1811619	moderate drought stress	2.959

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.290
DRR006520	Root Summer glycyrrhizin high producing strain	2.420
DRR006521	Root Winter glycyrrhizin high producing strain	0.856
DRR006522	Root Winter glycyrrhizin high producing strain	0.715
DRR006523	Root Summer glycyrrhizin low producing strain	1.794
DRR006524	Root Summer glycyrrhizin low producing strain	1.557
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.975
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.864

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.614
SRR2868004	Drought Stress (root)	12.938
SRR2967015	Control (root)	14.547

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.169
SRR9715740	Leaf	2.831
SRR9715741	Leaf	5.184
SRR9715739	Root	1.167
SRR9715742	Root	5.184
SRR9715743	Root	3.962

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.772
SRR8749028	MeJA induced 9h	0.478
SRR8749029	MeJA induced 9h	0.219
SRR8749030	Uninduced	0.793
SRR8749031	Uninduced	0.206
SRR8749032	Uninduced	0.197

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.931
SRR8400027	Control - Root	8.446