Gene detail

Gene detail information of Glyur000019s00002101

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G57180.1	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_007162145.1	0	hypothetical protein PHAVU_001G128000g [Phaseolus vulgaris]
COG	YP_006844975.1	1.00E-40	GTP-binding protein [Amphibacillus xylanus NBRC 15112]
Swissprot	tr\|Q6YPG5\|NOS_ORYSJ	2.00E-26	Putative nitric oxide synthase
trEMBL	tr\|V7CVL2\|V7CVL2_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW34139.1}

Sequence

Transcript Sequence

>Glyur000019s00002101.1
ATGGCTATCTTCTTGTCTACAATTGCAGTTCCTTCCATCAAGCTCAGCTCCAAGCTACCCATCTTCAACAACACGCAAGAGCACGCACTTCCAACTTTTCGCCATTTCATAGATACTAGCAAGCGCTTCGAGAAAGTTCCATCCTTGATTGCTTTTGCGGTAAACGGTAACCACCCCACTCAGAGTAGTAATAATAATCAGGCTAAAACCATGCCTAGGAGAGATGGTGGAACCCCGTTTTTGAGTGAGGGTAGAGATGAAGATGAAGCCCGTGGACCTATTTGCCCTGGTTGTGGAGTCTTCATGCAAGACAAAGACCCAAACCTCCCTGGGTATTACCAACAAAGGGAGGTTAAAGTGGAAGAGTTTTCAGAAGAGGATGATGGGTTTGATGATGATGATGAAGTAGACGGAGAAGTGAGGTTTTTCGATAGCAGTGAAAATAAGCTTGAAGAAGACACTAAGGGGTTAACAGATGAGTTAGATTGGGATTCTGATGAGTGGGAGGCTAAGTTACTGGGGGAAGATGATGATGATGATAAGTTGGAATTGGATGGGTTTGCCCCTGCAGGGGTTGGGTATGGTAACGTTACGGACGCGGTTCTGGAGAGGGCGAAGAAGAAGAAGGTGTCAAAAGCTGAGAAGAAGNGGATGGCCAGGGAGGCTGAGAAGCTGAAAGAAGAGGTTACTGTGTGTGCTAGGTGCCACTCCTTGAGGAATTATGGGCTGGTGAAAAACCTGTCAGCTGAGAATTTGATACCCGATTTCGATTTCGATAGGTTGATCTCTACTAGGTTGATGAGTCCCTCTGGTAGTGGCAGTGCTACTGTTGTGGTCATGGTCGTGGATTGTGTTGATTTTGATGGTTCCTTCCCCAGGACAGCAGTGAAGTCNTTGTTTAAGGCATTGGAAGGGATCCGGGATAACTCGAAGAAGGGCAAGAAACTGCCAAAGCTTGTCCTTGTGGGAACAAAGGTTGATCTCCTTCCATCCCAGGTCTCTCCTACNAGGTTAGATAGATGGGTTCGGCACCGTGCGATTGCTGGAGGGGCGCCTAAGTTGAGCGCGGTTTATTTGGTCAGTTCGCGTAAGGATTTAGGGATAAGGAATTTGCTGTCCTTCATAAAGGATTTGGCTGGTCCTCGTGGGAACGTGTGGGTAATTGGGGCTCAGAATGCTGGGAAGTCTACTCTGATCAATGCATTTGCAAAGAAACAAGGAGTCAAAGTTACAAAGCTCACGGAAGCTCCGGTTCCTGGGACGACACTTGGGATCTTGAGAATTGGAGGAGTTTTGTCAGCTAAGACTAAGATGTTTGACACTCCAGGGCTCTTGCATCCATATTTAGTGTCAATGAGATTGAATCGGGAGGAACAAAAGATGGTTGAGATACGGAAGGAACTGCGGCCTCGGTCATATAGAATTAAGGCAAGTTACTTATTGCCATTGTTATTCTCTATCCTGGATCTGGATGCAGGACAGGCTGTACATGTTGGTGGCTTGATAAGACTTGACCTTGTTGAAGCCTCTGTTGAAACAATATATGTCACAGTTTGGGCATCACCAAGTGTTTCTCTTCACGTAGGGAAAATAGAAAATGCTGATGAGGTTTGGAATAATCATGTTGGCATCAGGCTGCAGCCTCCAATTGGTAGTGACCGCGCTGCTGAATTAGGAACATGGCAAGAAAGGGAAGTAAAAGTATCTGGATCTAGTTGGGATGTCAACAGCATTGACATAGCAATAGCTGGTTTAGGTTGGTTCTCTCTGGGTCTCAAAGGTGAAGCAACAACGAAATTGAGGACCTTTGATGGAGTTGAAGTAACTTTGAGAGAACCTTTGGTCCTTGACCGGGCCCCATCCCTTGAGAAACCAGGTTTTTGGTTACCAAAAGCCATCTCTGATGCTATCGGCAACCAAACTAAGCTTGAAGCTCAAAGAAGGAAGAAACTTGAAGATGGGGAAACGGAATATGTGGGTGCAGGGGCAGAGCTATCCGCATGAAAAGAACTGAATTGTTTTGCCTCTGACTCTCATTCAGGATGAGAATAGAAGTTGTAACTGAACTAACGTGCTGCAGAGGCAATAACATGTTTGCAACTGGAAGCTCTCTCCACTAGTTGGTGCGTGATTGCCCCCACCAACTTATAGAAAGAGAATAGAAATTAGTACATTCCTTGCTGTTTAGGTGTCACAGTCGGTGATTATATATTTTTATGTGGTTTTGAGATGAGTCGNAAGACTTATGTCTTTAATGTACATATATACATACCGGTGACACCTGCATTTTGGGAGGTAGTTTTTCAAATTTTATGTATTGATTGCCTTTGCACAAGGCAGAAAAATAGGATTATCTGTGACGAGAAAAGCGAAAGACATATTTTTAAATGTTTTCAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00019	116852	120778	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000019s00002101.1	PF01926.18	MMR_HSR1	385	447	8.10E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.226
SRR1783600	control	1.354
SRR1783602	moderate drought stress	2.044
SRR1811619	moderate drought stress	1.914

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.471
DRR006520	Root Summer glycyrrhizin high producing strain	4.371
DRR006521	Root Winter glycyrrhizin high producing strain	1.885
DRR006522	Root Winter glycyrrhizin high producing strain	1.752
DRR006523	Root Summer glycyrrhizin low producing strain	3.090
DRR006524	Root Summer glycyrrhizin low producing strain	2.897
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.799
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.592

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.388
SRR2868004	Drought Stress (root)	4.130
SRR2967015	Control (root)	4.467

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.482
SRR9715740	Leaf	2.899
SRR9715741	Leaf	2.647
SRR9715739	Root	1.098
SRR9715742	Root	2.554
SRR9715743	Root	2.470

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.342
SRR8749028	MeJA induced 9h	1.197
SRR8749029	MeJA induced 9h	0.809
SRR8749030	Uninduced	0.186
SRR8749031	Uninduced	0.160
SRR8749032	Uninduced	0.201

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.897
SRR8400027	Control - Root	4.354