Gene detail

Gene detail information of Glyur000019s00002099

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G57180.1	3.00E-123	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_004493437.1	0	PREDICTED: uncharacterized protein LOC101488269 [Cicer arietinum]
COG	YP_006844975.1	2.00E-25	GTP-binding protein [Amphibacillus xylanus NBRC 15112]
trEMBL	tr\|Q2HRH2\|Q2HRH2_MEDTR	0	N-acetylglucosaminyl transferase component (Gpi1) {ECO:0000313\|EMBL:AES81287.1}

Sequence

Transcript Sequence

>Glyur000019s00002099.1
ATGGCTATCTTCTTGTCTACAATTGCAGTTCCTTCCATCAAGCTCAGCTCCAAGCTACCCATCTTCAACAACACGCAAGAGCACGCACTTCCAACTTTTCGCCATTTCATAGATACTAGCAAGCGCTTCGAGAAAGTTCCATCCTTGATTGCTTTTGCGGTAAACGGTAACCACCCCACTCAGAGTAGTAATAATAATCAGGCTAAAACCATGCCTAGGAGAGATGGTGGAACCCCGTTTTTGAGTGAGGGTAGAGATGAAGATGAAGCCCGTGGACCTATTTGCCCTGGTTGTGGAGTCTTCATGCAAGACAAAGACCCAAACCTCCCTGGGTATTACCAACAAAGGGAGGTTAAAGTGGAAGAGTTTTCAGAAGAGGATGATGGGTTTGATGATGATGATGAAGTAGACGGAGAAGTGAGGTTTTTCGATAGCAGTGAAAATAAGCTTGAAGAAGACACTAAGGGGTTAACAGATGAGTTAGATTGGGATTCTGATGAGTGGGAGGCTAAGTTACTGGGGGAAGATGATGATGATGATAAGTTGGAATTGGATGGGTTTGCCCCTGCAGGGGTTGGGTATGGTAACGTTACGGACGCGGTTCTGGAGAGGGCGAAGAAGAAGAAGGTGTCAAAAGCTGAGAAGAAGGGGATGGCCAGGGAGGCTGAGAAGCTGAAAGAAGAGGTTACTGTGTGTGCTAGGTGCCACTCCTTGAGGAATTATGGGCTGGTGAAAAACCTGTCAGCTGAGAATTTGATACCCGATTTCGATTTCGATAGGTTGATCTCTACTAGGTTGATGAGTCCCTCTGGTAGTGGCAGTGCTACTGTTGTGGTCATGGTCGTGGATTGTGTTGATTTTGATGGTTCCTTCCCCAGGACAGCAGTGAAGTCNTTGTTTAAGGCATTGGAAGGGATCCGGGATAACTCGAAGAAGGGCAAGAAACTGCCAAAGCTTGTCCTTGTGGGAACAAAGGTTGATCTCCTTCCATCCCAGGTCTCTCCTACGAGGTTAGATAGATGGGTTCGGCACCGTGCGATTGCTGGAGGGGCGCCTAAGTTGAGCGCGGTTTATTTGGTCAGTTCGCGTAAGGATTTAGGGATAAGGAATTTGCTGTCCTTCATAAAGGATTTGGCTGGTCCTCGTGGGAACGTGTGGGTAATTGGGGCTCAGAATGCTGGGAAGTCTACTCTGATCAATGCATTTGCAAAGAAACAAGGAGTCAAAGTTACAAAGCTCACGGAAGCTCCGGTTCCTGGGACGACACTTGGGATCTTGAGAATTGGAGGAGTTTTGTCAGCTAAGACTAAGATGTTTGACACTCCAGGGCTCTTGCATCCATATTTAGTGTCAATGAGATTGAATCGGGAGGAACAAAAGATGGTTGAGATACGGAAGGAACTGCGGCCTCGGTCATATAGAATTAAGGCAAATCATAAGATGAAGATGGGAAGACATTGTAGGCTTTGGTGGCCAAAGCAGCTCTTATCAAACCAAGAATCATCCTCCAGTATTTTACTGGGGTGGTTTGTCACCTGCTCACCNTCATCCCTTGACATTGTTGTAGCCTGTACTTGTAGTGAAGTCTTGCTTTCTAGTTCTAGTCCTGGCATTGAGGGGATCATTCATGACATACGTGGGAGCATGCCCAAAGTGCTTCAGGATAACTCCATCTTCTCTGTACTTGGTCTGTGTATCTCTGACACTAGTAGCAATAGTTTGATAGCTGAAGCAGAAGTTGATAAAAAAAAGTTCTCTGATTGTGGAAATGCTTGGGCTGAGGGAAGTACAATTATATACAGAAAGAATAACTGTAGGAGTTGCAGTTGCCTACAATTAGATGGATCATTGAGGAAAAGTAGCCAATCTTTTCTTGAAAAAAGTAATTGGGTCCTGCTGATGTTTGATTCTCCTAAACAGAATGACGCAGGAACACACAGGCTTCCAAAACTGCACCACATTCATTGGAATGGACTAACTGTGTCGGAATATGATGCTCACGTAATAATTTATGAAACACCCTCTTATGGTGCTCATCATTTCTCNTTGTGTCAATTTGGTTCAAATGAGCATGCGAAAACTTCCATGAAGAATCCTAAGTGGGTTGATGAGCTTAATAAAAAGCAGCAATTAATTGATTTGGATACAGTTATTTTGGCAATTAATTGCACAGCTGCTGCTAAAAGAATTTTTGACAGACATGTGGTCCCAAGAAGATCCTTGAGCCAGCTCTCTATATTTCCCATGTTTTTTGTTTTCATAGGGCATCTGGTTTCCAAGTTTATAGCTTCTCTCTCCACTGGGTTCTATATTGTATTTCAGTTTNTCCAAACACATTTTAATTATGAATCAGAATCATGGATGTATGTGACATCAGCAAATGTATTAAAGAAGACTGCATGGATAAATATCCGAATCCGTTGTTGTCAGATATTATACTGGCCAATCTTTCTGCAGGAGAATGACCTCAGGTCACGNTCATGTGTTGAATATGCAGAGAAAGCTGCAATGCATAAGCATTCCATGTGGTCAACTTTGGTTGTTGATATTCTCCTGGGAAACTTGGTTGGCTGGTCACTGTTATATCATGCAGAATCCATTTGTCTGTTGGTTTTGAACTTTAATCATTGGTTTGCCACATTTTTGCGCTCTGGATGTGTTTGGTTAATGGGAAACCCTGCAGGCTTCAAATTGAATGCCGAGTTGGCAGGAGTACTTGGCATGGTTTCTTTGAATGCAATCCAAGTATGGTCAACACTCTGGATCTTTATGGGTTTCATCTTCAATTATACTATTCGAGGCCTTTCTATATTAGGAATTCTTTGTGGATTCACCGTACCTGCTGCTTTGATCATAGACATGATTGCGTTGGCTAGCTTACATGTTTCAACTCTTCACTGGTTGATTTCACTTGTATATTCATCACAAATACAGGCATTAGCAGCCTTGTGGCGTCTTTTCAGGGGTCGGAAGTGGAATCCTCTTCGTCAGAGACCAGGAAGATTCCCTTGTGGAATATGGCTTGAAAATTTTGGATGTCAGAGTATTCGTACTGTTTCTACAAGTGCTGTTGAAANGAATTCGTCCAAGGAATCATTGCATCTAAAGGAGTTCAATGGAGAAAAATCTAGTATTCTGGTTTCAGTTCTCCACAGCAACTATTTGAGCATAGGAAAAGTTATCTTGCCTCACTACAAGAATGTATTTCTGGGAGTTTCGGGCTCATCAATCTCNGCAGTAGCTTATGGAATTCTCATTGGGCAAAGAATGCCATCTATGCGTGGAACTCTTCTTCCTTCACCAATGCCATGGATGTCCCTGCCCTACAAAGAGTATTGGTGCCTTTGTCATGATTCACTTATTGCATGCTTCAGATGATGGTGGCTTTAGCTCGGATTTTTGTTTTTTGGTTGCGTATTAGCTTAGGGATTTAATTCCACAGATTTCATCCAACTTGTTTTTCTCTGATTTTAGTGGCTTTTACTCGTTTCAATGGGTAATATTGAGAATTCTTCATAACAGTTCATCCCTAATCCAGCATTCGATGTGTTTCTAGTCCTACTCTTCAAAGCATGGTGCAGTCTGCAANTTTT

Protein Sequence

>Glyur000019s00002099.1
MAIFLSTIAVPSIKLSSKLPIFNNTQEHALPTFRHFIDTSKRFEKVPSLIAFAVNGNHPTQSSNNNQAKTMPRRDGGTPFLSEGRDEDEARGPICPGCGVFMQDKDPNLPGYYQQREVKVEEFSEEDDGFDDDDEVDGEVRFFDSSENKLEEDTKGLTDELDWDSDEWEAKLLGEDDDDDKLELDGFAPAGVGYGNVTDAVLERAKKKKVSKAEKKGMAREAEKLKEEVTVCARCHSLRNYGLVKNLSAENLIPDFDFDRLISTRLMSPSGSGSATVVVMVVDCVDFDGSFPRTAVKSLFKALEGIRDNSKKGKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAIAGGAPKLSAVYLVSSRKDLGIRNLLSFIKDLAGPRGNVWVIGAQNAGKSTLINAFAKKQGVKVTKLTEAPVPGTTLGILRIGGVLSAKTKMFDTPGLLHPYLVSMRLNREEQKMVEIRKELRPRSYRIKANHKMKMGRHCRLWWPKQLLSNQESSSSILLGWFVTCSPSSLDIVVACTCSEVLLSSSSPGIEGIIHDIRGSMPKVLQDNSIFSVLGLCISDTSSNSLIAEAEVDKKKFSDCGNAWAEGSTIIYRKNNCRSCSCLQLDGSLRKSSQSFLEKSNWVLLMFDSPKQNDAGTHRLPKLHHIHWNGLTVSEYDAHVIIYETPSYGAHHFSLCQFGSNEHAKTSMKNPKWVDELNKKQQLIDLDTVILAINCTAAAKRIFDRHVVPRRSLSQLSIFPMFFVFIGHLVSKFIASLSTGFYIVFQFXQTHFNYESESWMYVTSANVLKKTAWINIRIRCCQILYWPIFLQENDLRSRSCVEYAEKAAMHKHSMWSTLVVDILLGNLVGWSLLYHAESICLLVLNFNHWFATFLRSGCVWLMGNPAGFKLNAELAGVLGMVSLNAIQVWSTLWIFMGFIFNYTIRGLSILGILCGFTVPAALIIDMIALASLHVSTLHWLISLVYSSQIQALAALWRLFRGRKWNPLRQRPGRFPCGIWLENFGCQSIRTVSTSAVEXNSSKESLHLKEFNGEKSSILVSVLHSNYLSIGKVILPHYKNVFLGVSGSSISAVAYGILIGQRMPSMRGTLLPSPMPWMSLPYKEYWCLCHDSLIACFR

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00019	101889	110405	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006506 GPI anchor biosynthetic process

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005525 GTP binding

GO:0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000019s00002099.1	PF01926.18	MMR_HSR1	385	447	1.90E-08
Glyur000019s00002099.1	PF05024.10	Gpi1	839	998	5.20E-42
Glyur000019s00002099.2	PF01926.18	MMR_HSR1	385	447	2.10E-08
Glyur000019s00002099.2	PF05024.10	Gpi1	839	1026	1.50E-53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.488
SRR1783600	control	3.416
SRR1783602	moderate drought stress	4.983
SRR1811619	moderate drought stress	5.009

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.567
DRR006520	Root Summer glycyrrhizin high producing strain	6.469
DRR006521	Root Winter glycyrrhizin high producing strain	10.575
DRR006522	Root Winter glycyrrhizin high producing strain	10.239
DRR006523	Root Summer glycyrrhizin low producing strain	4.491
DRR006524	Root Summer glycyrrhizin low producing strain	4.546
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.293
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.385

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.988
SRR2868004	Drought Stress (root)	12.073
SRR2967015	Control (root)	10.648

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.603
SRR9715740	Leaf	7.933
SRR9715741	Leaf	8.636
SRR9715739	Root	2.717
SRR9715742	Root	5.060
SRR9715743	Root	5.038

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.745
SRR8749028	MeJA induced 9h	3.270
SRR8749029	MeJA induced 9h	2.035
SRR8749030	Uninduced	5.006
SRR8749031	Uninduced	2.122
SRR8749032	Uninduced	1.702

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.790
SRR8400027	Control - Root	15.772