Gene detail

Gene detail information of Glyur000019s00002095

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G52820.1	7.00E-87	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	KHN14924.1	6.52E-159	Gibberellin 20 oxidase 3 [Glycine soja]
COG	YP_553500.1	9.00E-17	putative oxidoreductase [Burkholderia xenovorans LB400]
Swissprot	tr\|Q945B6\|AOP1L_ARATH	2.00E-92	Probable 2-oxoglutarate-dependent dioxygenase AOP1.2
trEMBL	tr\|I1N8V6\|I1N8V6_SOYBN	5.00E-159	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G31450.1}

Sequence

Transcript Sequence

>Glyur000019s00002095.1
ATGGGATCAGAAACCGAAGTGAAGCTTCCAGTTATTGAATTCTCCATTATTCTGGACTTGGAATCCAATGCTGCGAATTGGGAATCAGTGAAATCCCAAGTCCACAAAGCACTTGCAGCGTATGGTTGCTTTGAGGCTGTGTTTGATAAAGTCCCTTTGGAGCTTAGAAAAGCCATGTTTCATGAACTGGAGGAGCTCTTCAATCTTCCCTTACAAACCAAGAAGCGCGTTGTTTCAAGCAAGCCTTACCATGGTTATCTTGGGGCTGGTGAACTCTATGAGAGCATGGGGATTGATGATGTGGATGTTTNTGAGAAAGTGGAAAGTTTGACCAGGACCTTGTGGCCAGAAGGAAAACCAAGCTTTAGCAAGAGTCTACAATCTTTCACGGAGCAAGTGTCAGGGCTGGATCAGATAATCAGGAAGATGATTTTGGAGAGTTTAGGTGTTGAAAAGTACTTGGAGGAACACATGAAATCAACACATTACCTTGCACGGCTCATCAAGTACAAAGGCCCTCAAACAAACGAAGCAAAAGTTGGCCTACCAGCACACACAGATAAGAACATACTCACCATATTGTGTCAAAATCAAGTGGACGGTTTACAGGCATGGACAAACGGAAGGGTGCATGTGCCCCTTCACCGAGTGGTGATGAGTGGGAATGAGACAAGGTTCTCTGTTGGGCTGTTCACAGTTCCAAAACCAGGGTACATAATAAAAGCCCCAGAGGAGCTTGTGACAGAGGAGCACCCTTTGCTTTTTAAGCCCTTTGTCCACAGTGAGTTCATGAAGTTCCTTCGCTCTTCTGAGGGTGTCAAAAATGCTCTCAAGAGTCTACAATCTTTCACGGAGCAAGTGTCAGGGCTGGATCAGATAATCAGGAAGATGATTTTGGAGAGTTTAGGTGTTGAAAAGTACTTGGAGGAACACATGAAATCAACACATTACCTTGCACGGCTCATCAAGTACAAAGGCCCTCAAACAAACGAAGCAAAAGTTGGCCTACCAGCACACACAGATAAGAACATACTCACCATATTGTGTCAAAATCAAGTGGACGGTTTACAGGCATGGACAAACGGAAGGGTGCATGTGCCCCTTCACCGAGTGGTGATGAGTGGGAATGAGACAAGGTTCTCTGTTGGGCTGTTCACAGTTCCAAAACCAGGGTACATAATAAAAGCCCCAGAGGAGCTTGTGACAGAGGAGCACCCTTTGCTTTTTAAGCCCTTTGTCCACAGTGAGTTCATGAAGTTCCTTCGCTCTTCTGAGGGTGTCAAAAATGCTCTCAAGGTTTATTCTGGAGTCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00019	77951	82176	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000019s00002095.1	PF14226.1	DIOX_N	10	92	2.10E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.171
SRR1783600	control	0.160
SRR1783602	moderate drought stress	0.029
SRR1811619	moderate drought stress	0.023

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.080
DRR006524	Root Summer glycyrrhizin low producing strain	0.084
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.070
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.042

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.582
SRR2868004	Drought Stress (root)	17.889
SRR2967015	Control (root)	19.931

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.138
SRR9715740	Leaf	0.608
SRR9715741	Leaf	0.148
SRR9715739	Root	0.075
SRR9715742	Root	0.047
SRR9715743	Root	0.139

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.045
SRR8749028	MeJA induced 9h	0.062
SRR8749029	MeJA induced 9h	0.092
SRR8749030	Uninduced	0.089
SRR8749031	Uninduced	0.058
SRR8749032	Uninduced	0.022

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.673
SRR8400027	Control - Root	2.194