Gene detail

Gene detail information of Glyur000019s00002094

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G52820.1	1.00E-65	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_003554144.1	6.44E-174	PREDICTED: 2-oxoglutarate-dependent dioxygenase AOP2-like [Glycine max]
COG	YP_008518749.1	5.00E-15	2OG-Fe(II) oxygenase superfamily protein [Variovorax paradoxus B4]
Swissprot	tr\|Q945B6\|AOP1L_ARATH	4.00E-59	Probable 2-oxoglutarate-dependent dioxygenase AOP1.2
trEMBL	tr\|I1N8V7\|I1N8V7_SOYBN	2.00E-174	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G31460.1}

Sequence

Transcript Sequence

>Glyur000019s00002094.1
ATGGGGTCACAAACAGAGTCTCAGCTACCTCTTCCCGTTATTGATTTCACCGATGAAAACCTGAAGCCAGGTACTGACACATGGGTTTTGGCTTGTGAAGCTGTGAGGAGTGCATTCGAGGAACACGGTGGATTCCTGGCACTCTACGATAAGGTTGATGCAGTGCTTCAAGACACTGTCTTCTCTGCTATGAAACAACTCTTTGATCTTCCATTGGAAACAAAAATGCAACGAACCACTGATAAACCTATCTATAGCTACGCTGGGCTACGCCCTGACATTCCTTTGTATGAATCCATGGCCATAGACAACCCGGTGTGTGCCAAAGATTGTCAAAATGAAAGTGTTAGTTCGTATGCAAAGAAAGTGGCAGAACTGGATTATATTGTGAAGAGAATGGTGTTTGAGGGATATGGACTGGACAATAAGAAGTGTGAGTCTTTGCTTGAATCAACCGATTATGTGCTCCGATGCTACAAATATAGAACACCTCAGGTGGGTGAAACCAACACAGGAGTGCATCCTCATACGGACTCGGGGTTCCTAACTATAATAAATCAGAGGTTAAATGGCTTAGAAATCCAATTGAAAGATGGGGAGTGGTTCCAGGTTGATGCCTCACCCTCTATGTTTGCTGTCTTGGCTGGTGATGCATTCATGGTGTGGAGTAATGACAGGATACGCGGTTGTGTACACAGAGTATTCATGAATTCAAAGGTAGACAGATACTCCATGGGGCTGCTTTCATATGCGGGTAAGGTAATGGAGCCACAGGAAGAGCTAGTGGATGAGGAACACCCTCTTCGTTATAAACCATTTGACCATTATGGGTATCTTCGCTTCTTCCTCACAGAAGAAGCTGTAAAATCTGCATCCAGGATTAAGGCATATTGTGCGAGCGAGCGAGCGACCACCATGGGCTCCCAACCTCCACAGTCTCAAATAATTCCCGTTGTTGACTTCACCGATGAAAACATGAAACCCGGCACCGACACGTGGCTGTCAGCCTGCCATGTTGTGAGGAATGCANTGGAGGACCATGGTTGTTTCGTGGCACGCTACGATAAACTCGGCAAAGAGCTCTGCGACTCTGTNGTCCTTGCAATGGAAGAGTTGTTTGGCCTCCCTGTGGAAACAAAAAAACAAAANACCAGTGACAAGCTCTTCCATGGCTACTTCGGACAAGTCTCCTGGCTTCCCTTGTTTGAATCTCTCGGCATTGATGACCCATTGACTATGCTTGGCTGTCAAAAATTCGCCCAAATCATTGAAAGCGTGAATGAGTATGCTAAGGTGTTGGGAGAATTAGACCAAATGGCCAAGAGAATGGTGTTTGAGAGCTATGGTGTGGACATGCAACGATGCGATGCTTTAATAGAATCAAGCAACTATCTGCTTCGATGCCTGAAATACAGAACACCCCAGATGGATGAAAATGATTTGGGGATGCACTCTCACTCGGACCTGACCCTCATATCCGTAGTGCATCAGCTGAATAATCTAAATGGCTTGGAAATCAAACTGAAGGATGGCGAGTGGAGCGGGGTGTGGAGTAATGGGAGGATACGCGCATGTGAACACAGAGTTATAATGAATGCAAAGACAACCAGATACTCCACCGGACTATTCTCTTTTGCGAGTAAGACGATGCAGATACCAGAGGAGCTAGTCAATGAGCAACACCCCTTGCGTTATAAACCAATGTTTGACCATTACGAATACCTTAGTTTCTATGACAGAGAGAAAATCAAAGAACCTGATCCCCGAATCCAAGCGTATTGTGGACTCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00019	74030	85085	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000019s00002094.1	PF14226.1	DIOX_N	11	87	1.30E-08
Glyur000019s00002094.1	PF03171.15	2OG-FeII_Oxy	157	245	7.20E-13
Glyur000019s00002094.1	PF14226.1	DIOX_N	316	394	1.90E-07
Glyur000019s00002094.1	PF03171.15	2OG-FeII_Oxy	466	543	2.60E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.720
SRR1783600	control	8.938
SRR1783602	moderate drought stress	14.256
SRR1811619	moderate drought stress	14.894

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.243
DRR006520	Root Summer glycyrrhizin high producing strain	2.354
DRR006521	Root Winter glycyrrhizin high producing strain	0.809
DRR006522	Root Winter glycyrrhizin high producing strain	0.774
DRR006523	Root Summer glycyrrhizin low producing strain	1.275
DRR006524	Root Summer glycyrrhizin low producing strain	1.177
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.125
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.147

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	147.840
SRR2868004	Drought Stress (root)	108.840
SRR2967015	Control (root)	127.233

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.420
SRR9715740	Leaf	0.426
SRR9715741	Leaf	0.216
SRR9715739	Root	27.340
SRR9715742	Root	12.461
SRR9715743	Root	15.974

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.360
SRR8749028	MeJA induced 9h	0.290
SRR8749029	MeJA induced 9h	0.407
SRR8749030	Uninduced	0.178
SRR8749031	Uninduced	0.014
SRR8749032	Uninduced	0.189

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.069
SRR8400027	Control - Root	8.644