Gene detail information of Glyur000019s00002088 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G41410.1 | 5.00E-49 | Calcium-binding EF-hand family protein |
| NR | XP_004493430.1 | 3.11E-126 | PREDICTED: probable calcium-binding protein CML36-like [Cicer arietinum] |
| COG | YP_007118813.1 | 5.00E-10 | putative signal transduction protein with EFhand domain [Oscillatoria nigro-viridis PCC 7112] |
| Swissprot | tr|P30188|CML35_ARATH | 2.00E-64 | Probable calcium-binding protein CML35 |
| trEMBL | tr|G7KRQ4|G7KRQ4_MEDTR | 3.00E-108 | Uncharacterized protein {ECO:0000313|EMBL:AFK35504.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00019 | 38997 | 39671 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000019s00002088.1 | PF13499.1 | EF-hand_7 | 82 | 137 | 3.80E-08 |
| Glyur000019s00002088.1 | PF13499.1 | EF-hand_7 | 158 | 219 | 6.00E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 123.874 |
| SRR1783600 | control | 126.615 |
| SRR1783602 | moderate drought stress | 75.505 |
| SRR1811619 | moderate drought stress | 77.361 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 483.684 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 469.141 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 121.379 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 113.868 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 630.605 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 624.862 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 186.312 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 181.841 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 133.436 |
| SRR2868004 | Drought Stress (root) | 242.496 |
| SRR2967015 | Control (root) | 325.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1077.051 |
| SRR9715740 | Leaf | 1030.681 |
| SRR9715741 | Leaf | 1039.797 |
| SRR9715739 | Root | 2413.066 |
| SRR9715742 | Root | 1708.830 |
| SRR9715743 | Root | 1782.412 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 459.012 |
| SRR8749028 | MeJA induced 9h | 369.510 |
| SRR8749029 | MeJA induced 9h | 369.857 |
| SRR8749030 | Uninduced | 274.567 |
| SRR8749031 | Uninduced | 91.263 |
| SRR8749032 | Uninduced | 228.931 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 340.416 |
| SRR8400027 | Control - Root | 466.988 |