Gene detail information of Glyur000018s00003748 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G78710.1 | 1.00E-106 | TRICHOME BIREFRINGENCE-LIKE 42 |
| NR | XP_007149521.1 | 0 | hypothetical protein PHAVU_005G077200g [Phaseolus vulgaris] |
| Swissprot | tr|Q9ZV89|TBL42_ARATH | 2.00E-128 | Protein trichome birefringence-like 42 |
| trEMBL | tr|V7BWU6|V7BWU6_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW21515.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00018 | 521440 | 540228 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000018s00003748.1 | PF14416.1 | PMR5N | 53 | 104 | 2.30E-20 |
| Glyur000018s00003748.1 | PF13839.1 | PC-Esterase | 104 | 336 | 6.40E-52 |
| Glyur000018s00003748.1 | PF14416.1 | PMR5N | 376 | 430 | 6.00E-19 |
| Glyur000018s00003748.1 | PF13839.1 | PC-Esterase | 431 | 685 | 1.10E-62 |
| Glyur000018s00003748.2 | PF14416.1 | PMR5N | 46 | 99 | 8.60E-23 |
| Glyur000018s00003748.2 | PF13839.1 | PC-Esterase | 101 | 367 | 3.30E-70 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.700 |
| SRR1783600 | control | 1.442 |
| SRR1783602 | moderate drought stress | 0.851 |
| SRR1811619 | moderate drought stress | 0.806 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.058 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.104 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.793 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.872 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.667 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.525 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.441 |
| SRR2868004 | Drought Stress (root) | 15.117 |
| SRR2967015 | Control (root) | 18.836 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.373 |
| SRR9715740 | Leaf | 3.246 |
| SRR9715741 | Leaf | 4.974 |
| SRR9715739 | Root | 1.973 |
| SRR9715742 | Root | 2.007 |
| SRR9715743 | Root | 2.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.912 |
| SRR8749028 | MeJA induced 9h | 1.405 |
| SRR8749029 | MeJA induced 9h | 0.939 |
| SRR8749030 | Uninduced | 0.516 |
| SRR8749031 | Uninduced | 0.050 |
| SRR8749032 | Uninduced | 0.158 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.493 |
| SRR8400027 | Control - Root | 12.312 |