Gene detail

Gene detail information of Glyur000018s00003738

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G53440.1	7.00E-159	Leucine-rich repeat transmembrane protein kinase
NR	XP_004488999.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53430-like [Cicer arietinum]
COG	YP_004775215.1	3.00E-39	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGG8\|Y5343_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At1g53430 (Precursor)
trEMBL	tr\|A0A072VAE9\|A0A072VAE9_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:KEH38591.1}

Sequence

Transcript Sequence

>Glyur000018s00003738.1
ATGGTAGACAACTTGATTGGAAAGTTACACAACGTTCCTGCAACGGAGATAGAGGATTGCTTTCTCAAGGGTCTCAATATATCTGGAGTTATACCCAGTGAATTTGGAAATCTCACTCAACTGAAAATACTTGATCTCACTCGGAATTATCTAAATGGCTCAATTCCAAAGAGTCTTGGACGCCTCTCNTCACTTGTGACACTGTCACTCTTGGGAAATAGACTTAGTGGTCCAATTCCTTCAGAAATGGGTNATATTGCAAGCCTGCAAGAAATGAACTTAGAAGATAATCAACTTGAAGGACCTCTTCCTCCCAGCCTTGGAAATTTGAGAAACTTGCAGAGATTACTGCTTTCTGCAAATAATTTTACAGGGACAATACCAGAAACGTTTGGCAACCTAAAGAATCTCACTCAATTTAGGATAGATGGAAGCAGTTTNTCTGGGAAAATCCCCAGTTTTATTGGGAACTGGACCAAACTTGATAGATTGGATTTGCAAGGCACATCCTTGGAAGGTCCAATTCCTCCTGTCATATCTGGATTGAAAAATTTGAAGGAATTGAGAATCTCTGATTTGAAGGGACCAAATATGACATTTCCTGATCTGAAGGATTTGAAACGCATGGAAAGACTGGAATTGAGAAATTGCTTGATCACTGGTCCCATTCCGGGCTACCTTAGCGAAATGGAAAATTTGAAAACTCTAGATTTGAGCTCCAACAGATTGACTGGTTCAATCCCAGATTCATTTCAGAACTTTGAATCAATNAATTTCATGTTTCTGACTAACAACTCTCTGAGTGGAACAATTCCTGGATGGATACTTGACAGCAAACAGAANATTGATGTATCTTTCAACAATTTTACACAGTCTTCTGCATCTANATGCCAGCTCTTGGACGTGAACTTAGCTTCCAGCCACTCTCCTTCAGCAAACACTTCAGTGTCTTGTTTGAAGATGGACCTACCTTGTTCAANAAAACCTCAGTATCATTCACTGTTCATAAACTGTGGAGGACCTTCAACAGAGTTTGAGGGCAATGAATATGAAGCCGACGAAAATCTACGTGGCATTTCAAACTATGCTGCTAGTACTAACGGCAAATGGGCATATAGCAGCACAGGAGTATTTCTAGGAAATGAAAAAGCTGATTATGTAGCAAGAAATGCCTTCTCTTTGAATATTAATGGCTCTGAATACTACCAAACAGCCCGCATGGCCCCTCTTTCTCTTAATTACTTTGGNTTTTGTATGCTGAGGGGAAATTATAAAGTGAAGCTTCATTTTGCCGAGATAATGTTTTCTGATGACCAGAAATTTAGCAGCCTTGGAAGGCGCATATTTGATGTTTCAATTCAAGGTTTTAGATATTTGAAAGATTTTGACATTNTGAAAGAAGCTGGTGGAGTTGGCANGGGAATCACTAAGGAGTTTAATGTTGATGTTAATGATACCACCTTGGAAATCCACTTATCCTGGGCAGGGAAAGGAACTAATGCCATTCCTAGGAGAGGTGTATATGGACCTCTTATATCTGCTATCACTGTGACCCCAAACTTTAAAGTTCCTTCAAATGGGCTGTCTGCTGGTGCAATTGTTGGAATTGTGGCTGCATCATTGCTGCTTGTCATACTGATACTCTTTGCCCTTTGGAAGATGGGTTATCTTTGTGGGAAAGATCCAACAGACAAAGAGCAAGGTAACCTTCTGGAGTTGGTGGATCCAAGTCTTGGTTCAAGCTACTCCCGTGAAGAGGTCATGAGAATGCTGCAGTTGGCACTCCTNTGCACCAATCCATCTCCAACTCTTAGACCACCCATGTCCTCTGTAGTGAGCATGCTTGAAGGAAAAANTCCAATTCAAGCCCCATTAGTCAAACGCAGTGATGGTGCACAAGATGCAAGATTTAAAGCCTTTGAGATCCTNTCACAAGACAGCCAAACCCATGTTTCTTCTACATTCTTGCATGATAGTATAGAGCAAAGAAGCAAATCAATGGATGGGCCATGGGTTGACTCCTCCATATCTCTTCCAAGTAAAGANGAATATTCTTCATCCAATAAACTTATTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00018	406243	413567	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000018s00003738.1	PF00560.28	LRR_1	40	62	0.43
Glyur000018s00003738.1	PF00560.28	LRR_1	88	110	0.27
Glyur000018s00003738.1	PF00560.28	LRR_1	112	134	0.11
Glyur000018s00003738.1	PF13855.1	LRR_8	209	267	1.60E-07
Glyur000018s00003738.1	PF11721.3	Malectin	333	515	3.10E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.160
SRR1783600	control	7.758
SRR1783602	moderate drought stress	12.159
SRR1811619	moderate drought stress	12.114

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.623
DRR006520	Root Summer glycyrrhizin high producing strain	8.612
DRR006521	Root Winter glycyrrhizin high producing strain	2.870
DRR006522	Root Winter glycyrrhizin high producing strain	2.562
DRR006523	Root Summer glycyrrhizin low producing strain	10.156
DRR006524	Root Summer glycyrrhizin low producing strain	10.589
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.378
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.284

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.887
SRR2868004	Drought Stress (root)	25.757
SRR2967015	Control (root)	18.082

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.356
SRR9715740	Leaf	4.040
SRR9715741	Leaf	10.378
SRR9715739	Root	1.691
SRR9715742	Root	9.867
SRR9715743	Root	8.402

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.028
SRR8749028	MeJA induced 9h	36.621
SRR8749029	MeJA induced 9h	31.744
SRR8749030	Uninduced	60.914
SRR8749031	Uninduced	63.811
SRR8749032	Uninduced	57.510

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.216
SRR8400027	Control - Root	10.256