Gene detail

Gene detail information of Glyur000018s00003729.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G56400.1	5.00E-25	WRKY DNA-binding protein 70
NR	XP_007149557.1	1.88E-83	hypothetical protein PHAVU_005G080200g [Phaseolus vulgaris]
Swissprot	tr\|Q9LY00\|WRK70_ARATH	3.00E-27	Probable WRKY transcription factor 70
trEMBL	tr\|V7BYA0\|V7BYA0_PHAVU	7.00E-84	Uncharacterized protein {ECO:0000313\|EMBL:ESW21551.1}

Sequence

Transcript Sequence

>Glyur000018s00003729.1
ATGGAGAATCGGTGTTCAAATGGCAGATCCGGCGCTATGGAACAAGAGCTAATCAAAGGGCTTGACATAGCAAACCAGCTACTTGAAGTACTTGCTCATCATCATGATCAATCAAATACTCAAGATAATGTTGTAGAAAGGCTAAGATCACCCTTTGCTGAAGATCTTATACGCAAGATATTGAGATCATTCACAAATACCCTTTCCCTCTTGAGCACCAATAATGATGGTGATGTCTCCGACAAGGAGGAGGTTGTGCCTCTCACTATCACAAATTTCTCTTCGTCCACAATTCTCCCAAAAAACGAGGATACAAATGATGAGTCTTGCAAGAGTTACTCCAATGCGAAAAAAAGAAGAGGATCAACCGCACCAACTTGGGAAAAGGACAGCTCAATTCTCATAGAAGATGGGTATGCATGGAGAAAATATGGACATAAAATGATAATGAATTCGAAATACCCCAGGAGCTACTACAGGTGCACTCACAAATGTGAACAAGGTTGTCCAGCAATCAAAAAGGTGCAAAGAATTCAAGAGGACCCTCCATTGTATCGCACAACATATTGTGGCAACCACATTTGCAAAGCCTCTTTAATTACTGATCCAGAGACAAATTTGGAACCTGCTTCTTCTTTGGGCTCTGCTATGTTCCTTAGCTTCAATAATAACAACTTTCAGAGCAAAGAAGAATACCCGTTTTCGTCTACACTTTTTGCATCCGCGAAACAAGAGCCGATGGAAGTGACTCCTGATAATTATGATCATATTAATGCTGGTAGCATCCAATTGAGTTCATCAGATTACCTTATGCTATGTGACTATGAACTTCATTGTGAGAGGCATGCTACTATAAAGGCAATGGAAGAAGAGCTAGTCAAAGGGCGTGACACAGCGAACCAATTACTTGAAGTACTTGTTGATCACAAATTGAACACTCACCATGGAGATGTAGAAGGGTTAAAATCACCCTTTGCTGAGAATCTTGTGCGCGAGCCAATAATGATGTCTCCAATGAGGAGATTTTGCCTATCCAATATCAAAGATTTTTCATCTGAGAATTCCCCAAAGCCTGAAGATCACATGGATAAGGCTTGCAAGAGGTTCTTCAACCCTAAAAATCGAAGAGGATGCTACAAAAGAAAGTTAAATGCACTAATTACTTGGGAGAAGGATAGCTCAATTTTGATTGAAGATGGCTATGGGTGGAGGAANTATGGACAAAAAACGATAATGAATTCAAAATACCTCAGGAGCTACTATAGATGCTCTTACAAAGATGACCAAGANTGTCCAGCTATCAAACAAGTGCAGAGAATTCAAGAGGACCCTCCATTGTACCGGACAACATATTATGGCCATCATAATTGCAAAACCTTTATCAATCCAGAGATGGCCTTGGAAGATGAAAACACTTCTTCTGGCTCTTCTAAATTCCTTAGCTTCAATAATAGCCTCCCAAGCAAAGAACAATACTCGTTTTCATCATCACTTTTTGCATCCACAAAACAAGAACCTGTTGATGAAGTGATTCCCTATTATCATATTCCACACAACCAATCAATAACCTCATCAGATTACCCCCCATCTTGTGACTATGAACATGATTTCAATTATTTGAGGCATGCCACTATGCTATCATCCACAGAGTCTAAGAACACGTCAATATTGGTTGAAGATGGTCATGCATGGAGAAAGTACGGACAAAAAAAGATAATGAATGCGAAATACCTCAGGAGCTACTATAGGTGCACTCACATGTATGATCAACATTGCCAATTTTTTTTTTTTTTTCAGAGAATTCGGGAGGACCCTCCGTTGTACCGAACAATGTATTATGGTCACCACACTTGCAAAAGCTCTTTCAATTCCGATATAAATTTGGAGCCCTTTTTGTCCTCTGACTCTTCTATATTACTTAGCTTTAGTAACAACGTCATTCCAAGCAAACAAGAATACTTTTTTTTTTTTTCACTTGCGTCAACAAAAGGAGAGCCCATGGAAGAGATTCACGAGGACTTTTTTTTTTTTTACCAATTGTCCTCACAAGAGAATCTCCTTTTATGCGATTTTGAAGTTTATTTCGATTATTCAGGGCATGGCGCCACTACGCTATCATCGACTAAATCTGTTGAATTTGAGAATGTTTATGAGCAATTTGGATTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00018	309729	332144	-

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000018s00003729.1	PF03106.10	WRKY	136	196	1.60E-21
Glyur000018s00003729.1	PF03106.10	WRKY	398	458	1.50E-19
Glyur000018s00003729.1	PF03106.10	WRKY	558	619	2.30E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.017
SRR1783600	control	0.017
SRR1783602	moderate drought stress	0.013
SRR1811619	moderate drought stress	0.028

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.050
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.330
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.430

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.234
SRR2868004	Drought Stress (root)	0.231
SRR2967015	Control (root)	0.121

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.098
SRR9715740	Leaf	3.268
SRR9715741	Leaf	4.791
SRR9715739	Root	0.119
SRR9715742	Root	0.099
SRR9715743	Root	0.083

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.956
SRR8749028	MeJA induced 9h	0.098
SRR8749029	MeJA induced 9h	2.536
SRR8749030	Uninduced	0.016
SRR8749031	Uninduced	0.649
SRR8749032	Uninduced	3.014

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.548
SRR8400027	Control - Root	0.431