Gene detail

Gene detail information of Glyur000018s00003727.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G78660.3	2.00E-113	gamma-glutamyl hydrolase 1
NR	XP_006593481.1	2.68E-173	PREDICTED: gamma-glutamyl hydrolase isoform X1 [Glycine max]
Swissprot	tr\|P93164\|GGH_SOYBN	2.00E-174	Gamma-glutamyl hydrolase (Precursor)
trEMBL	tr\|I1M2Y5\|I1M2Y5_SOYBN	2.00E-171	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G34290.1}

Sequence

Transcript Sequence

>Glyur000018s00003727.1
ATGGCACCAACGCACCATAAATACTCCAACCTCTTCCCCATTATGAGCCACAGTTCCTATCCTCCTACCCCATCATCATTTCTCCCATCCCATTCCCACATGGCAAACCAAAGAGTTTGTCTCTTTTCCCTCTTCCTATGCCTTCTCTCTGTGATCAGTGCCCTAGATGGGAACATTTTTCTCCCGAGTCAACTCGTAGATGATGACTCACTGAGTTCATCTACGACGAGTTGCCCCGCAACTGACCCCAACCTTTACTACAGGCCCGTCATTGGAATCCTCAGCCACCCCGGCGACGGTGCCTCCGGTCGCCTTAGCAATGCCACCGGCGTTTCTTATATCGCCGCCTCCTACGTTAAATTTGTCGAGTCCGGCGGTGCCCGAGTTATTCCCCTTATCTACAACGAGTCACCCGAGATTCTTAAAAAGAAGCTCGAATTGGTCAATGGGGTGCTCTTCACTGGTGGGTGGTCTAAAACTGGTTTATATTTCGAAACTGTTCGAAACATTTTTGAGAAAGCTTTAGAGAAAAATGACGCCGGAGATCATTTCCCAACAATTGGCATCAACTTAGGTTATGAACTTTTATTAATGATCGTAAGCGAGGACAATGGTATTCTTGAAAATTTTAATGCATCGAGTCTGCCGAGTACTCTTCAATTCAGTAAGAATGCAATTTTGGAAGGATCTGTATTCCAAAGATTTCCTCCGGACTTGTTGGATAAGTTGAAGACAGATTGTCTTGTCCTGCACAATCATCGGTATGGCATATCCCCTGCAAAGCTTCAAAGTAATNCCAAGTTATCGAGCTTTTTTGAGATCTTGTCAACGACTAAGGATAAAGATGACAAGGTTTTCGTTTCCACAGCACGTGCACAGAACTACCCGGTGACTATCTTGCAATGGGATCCAGAGAAAAATGCCTTTGAATGGGCCCAATCTGCAAAAAACCCTCACACTGAGGATGCCATTCGGGTGACTCAGTCCACTGCTAACTTTTTTGTCAGCGAAGCTAGGAAATCCTCAGCCAGACCAGATGCTCAAGAAGTGAGAGACAATCTTATATACAATTACATACCTACTTATGGGGGGAAGGCTGGGAAAGGATATGATCAAGTTTATCTCTTCGAGTGAAAATTCTAAATGTTGNAGTGCATATCCATGGATATAATTTTGTGCCTATTATTATGGACTATGGNTGTATGAGGAAATAAAATCTTTATGCAAAATTAATGATGACTGTAAGATGCTTAATATTATGGCAATGCTCTGCTCTTTAATGTGTGCTCTATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00018	298683	302023	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01307	GGH	EC:3.4.19.9	Folate biosynthesis	map00790
			Antifolate resistance	map01523

Gene Ontology

biological_process
GO:0006541 glutamine metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0008242 omega peptidase activity

GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000018s00003727.1	PF07722.8	Peptidase_C26	89	305	7.80E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	39.155
DRR006526	Leaf Summer glycyrrhizin high producing strain	38.949

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.067
SRR2868004	Drought Stress (root)	0.036
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	216.848
SRR9715740	Leaf	17.145
SRR9715741	Leaf	56.257
SRR9715739	Root	0.000
SRR9715742	Root	0.919
SRR9715743	Root	1.126

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.003
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.149
SRR8400027	Control - Root	1.129