Gene detail information of Glyur000018s00003725.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G78680.1 | 1.00E-128 | gamma-glutamyl hydrolase 2 |
| NR | XP_003596306.1 | 0 | Gamma-glutamylhydrolase [Medicago truncatula] |
| Swissprot | tr|O65355|GGH2_ARATH | 7.00E-168 | Gamma-glutamyl hydrolase 2 (Precursor) |
| trEMBL | tr|G7ITD9|G7ITD9_MEDTR | 0 | Gamma-glutamylhydrolase {ECO:0000313|EMBL:AES66557.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00018 | 288435 | 295495 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01307 | GGH | EC:3.4.19.9 | Folate biosynthesis | map00790 |
| Antifolate resistance | map01523 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000018s00003725.1 | PF07722.8 | Peptidase_C26 | 57 | 273 | 6.00E-42 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 72.516 |
| SRR1783600 | control | 73.066 |
| SRR1783602 | moderate drought stress | 72.742 |
| SRR1811619 | moderate drought stress | 72.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 72.782 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 71.957 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 41.657 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 40.580 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 49.571 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 49.469 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 30.766 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 30.677 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 83.139 |
| SRR2868004 | Drought Stress (root) | 59.246 |
| SRR2967015 | Control (root) | 63.034 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 50.122 |
| SRR9715740 | Leaf | 49.377 |
| SRR9715741 | Leaf | 48.448 |
| SRR9715739 | Root | 37.163 |
| SRR9715742 | Root | 44.422 |
| SRR9715743 | Root | 42.234 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 86.377 |
| SRR8749028 | MeJA induced 9h | 136.467 |
| SRR8749029 | MeJA induced 9h | 76.640 |
| SRR8749030 | Uninduced | 93.654 |
| SRR8749031 | Uninduced | 39.457 |
| SRR8749032 | Uninduced | 56.705 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 91.231 |
| SRR8400027 | Control - Root | 65.732 |