Gene detail information of Glyur000018s00003724 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G78650.1 | 9.00E-65 | DNA-directed DNA polymerases |
| NR | XP_004489009.1 | 0 | PREDICTED: uncharacterized protein LOC101491492 isoform X1 [Cicer arietinum] |
| trEMBL | tr|G7ITE6|G7ITE6_MEDTR | 0 | DNA polymerase subunit Cdc27 {ECO:0000313|EMBL:AES66564.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00018 | 282063 | 286603 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000018s00003724.1 | PF09507.5 | CDC27 | 23 | 71 | 1.80E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.305 |
| SRR1783600 | control | 6.139 |
| SRR1783602 | moderate drought stress | 4.530 |
| SRR1811619 | moderate drought stress | 4.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.277 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.189 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.410 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.117 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.454 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.370 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.794 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.768 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.799 |
| SRR2868004 | Drought Stress (root) | 9.106 |
| SRR2967015 | Control (root) | 7.806 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.581 |
| SRR9715740 | Leaf | 6.291 |
| SRR9715741 | Leaf | 5.569 |
| SRR9715739 | Root | 0.372 |
| SRR9715742 | Root | 1.946 |
| SRR9715743 | Root | 1.142 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.354 |
| SRR8749028 | MeJA induced 9h | 14.683 |
| SRR8749029 | MeJA induced 9h | 11.640 |
| SRR8749030 | Uninduced | 7.789 |
| SRR8749031 | Uninduced | 4.777 |
| SRR8749032 | Uninduced | 5.434 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.266 |
| SRR8400027 | Control - Root | 7.798 |