Gene detail

Gene detail information of Glyur000018s00003716

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G16920.1	2.00E-109	RAB GTPase homolog A1B
NR	BAA02113.1	1.39E-153	GTP-binding protein [Pisum sativum]
COG	YP_008431664.1	1.00E-25	hypothetical protein N186_01315 [Thermofilum sp. 1910b]
Swissprot	tr\|Q39222\|RAA1B_ARATH	1.00E-137	Ras-related protein RABA1b
trEMBL	tr\|Q7DLK8\|Q7DLK8_VICFA	5.00E-154	Guanine nucleotide regulatory protein {ECO:0000313\|EMBL:CAA82709.1}

Sequence

Transcript Sequence

>Glyur000018s00003716.1
ATTTTCACATTTCCCCCACTCTACTCTCTCTNTCTCTCTCTNGTTTGTGTGTGTGTGTTTAGACNTGAGAGTAAAGTAGAAAGTAGAAGAGGAAGAGCAGAGAGAGCAGCAGTGAGCAAAGAGAAGGGAGAAGAAGGAAAAGGAGGAATGGCGGGATACAGAGCAGACGATGACTACGACTACCTGTTCAAGGTGGTGCTGATCGGAGACTCGGGGGTGGGGAAGTCGAACCTGTTGTCGAGGTTCACGAAGAACGAGTTCAACCTTGAGTCCAAGTCCACCATTGGTGTTGAGTTCGCCACTCGCACCTTGAACGTCGACTCCAAAGTCATCAAGGCTCAGATCTGGGACACTGCTGGCCAAGAGAGGTATCGCGCCATNACCAGTGCTTACTATCGTGGGGCAGTTGGTGCACTTCTTGTGTATGATGTTACTCGCCATGCAACNTTTGAGAATGTTGACAGATGGCTGAAAGAACTGCGAAACCACACAGATGCCAATATCGTCGTGATGCTTGTTGGGAACAAATCAGATCTTCGACACCTTGTAGCCGTATCAACTGAAGATGGGAAGTCTTATGCTGAGAAAGAATCACTTTACTTCATGGAAACCTCAGCTCTGGAGGCTACTAATGTAGAGAATGCATTCGCTGAAGTTCTGACTCAAATTTACCACATAGTTAGCAAGAAAGCAGTAGAAGGGGCTGAAAATGGAAATGCATCTGTGCCAGCCAAAGGAGAGAAAATAGATCTCAAAAATGATGTGTCTGCCCTGAAAAGAGTTGGTTGCTGCTCAAGCTAAGATTGAAAAACATAACTCATTTGGTTGCTATCGGCTCTGTTGTACGTGTAATATTCTGAGAGATACGAACTAGAAGGAAAATGTAATTTAATTTTTAATAGCATGTTATACTCTCTGTGTAATCTTAAAAAACATGTTTCATGTTTCCATAGGAGCTGCTGGGGAAGCAAGTTGATTGCTACGCGGCCTAGTCTTACTTATTGTAGTGTNGTTATAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00018	225136	229050	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0006913 nucleocytoplasmic transport

GO:0007165 signal transduction

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component

GO:0005622 intracellular

GO:0016020 membrane

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000018s00003716.1	PF00071.17	Ras	64	224	4.90E-61

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	59.365
SRR1783600	control	59.111
SRR1783602	moderate drought stress	66.393
SRR1811619	moderate drought stress	66.309

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	80.646
DRR006520	Root Summer glycyrrhizin high producing strain	80.345
DRR006521	Root Winter glycyrrhizin high producing strain	41.165
DRR006522	Root Winter glycyrrhizin high producing strain	39.897
DRR006523	Root Summer glycyrrhizin low producing strain	56.850
DRR006524	Root Summer glycyrrhizin low producing strain	56.463
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.175
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.096

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	157.954
SRR2868004	Drought Stress (root)	95.584
SRR2967015	Control (root)	115.497

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	38.915
SRR9715740	Leaf	23.885
SRR9715741	Leaf	22.479
SRR9715739	Root	22.236
SRR9715742	Root	48.483
SRR9715743	Root	43.306

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	119.870
SRR8749028	MeJA induced 9h	84.962
SRR8749029	MeJA induced 9h	84.340
SRR8749030	Uninduced	10.932
SRR8749031	Uninduced	3.262
SRR8749032	Uninduced	9.411

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	127.012
SRR8400027	Control - Root	127.992