Gene detail information of Glyur000018s00003715 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G78780.2 | 7.00E-91 | pathogenesis-related family protein |
| NR | XP_003596337.1 | 1.03E-132 | Pathogen-related protein [Medicago truncatula] |
| COG | YP_004584106.1 | 3.00E-42 | hypothetical protein [Frankia symbiont of Datisca glomerata] |
| Swissprot | tr|P16273|PRPX_HORVU | 8.00E-72 | Pathogen-related protein |
| trEMBL | tr|Q2HSC5|Q2HSC5_MEDTR | 4.00E-133 | Uncharacterized protein {ECO:0000313|EMBL:AFK39845.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00018 | 218616 | 221094 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.231 |
| SRR1783600 | control | 2.263 |
| SRR1783602 | moderate drought stress | 2.294 |
| SRR1811619 | moderate drought stress | 2.208 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.699 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.593 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 65.572 |
| SRR2868004 | Drought Stress (root) | 108.385 |
| SRR2967015 | Control (root) | 66.735 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.300 |
| SRR9715740 | Leaf | 4.837 |
| SRR9715741 | Leaf | 9.438 |
| SRR9715739 | Root | 2.636 |
| SRR9715742 | Root | 3.526 |
| SRR9715743 | Root | 3.396 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 35.954 |
| SRR8749028 | MeJA induced 9h | 149.028 |
| SRR8749029 | MeJA induced 9h | 59.976 |
| SRR8749030 | Uninduced | 207.624 |
| SRR8749031 | Uninduced | 114.426 |
| SRR8749032 | Uninduced | 98.538 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 35.019 |
| SRR8400027 | Control - Root | 16.639 |