Gene detail

Gene detail information of Glyur000018s00003709.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G53320.1	1.00E-151	tubby like protein 7
NR	XP_003540491.1	0	PREDICTED: tubby-like F-box protein 7-like [Glycine max]
Swissprot	tr\|Q93VI8\|TLP7_ARATH	0	Tubby-like F-box protein 7
trEMBL	tr\|I1LV72\|I1LV72_SOYBN	0	Tubby-like F-box protein {ECO:0000256\|RuleBase:RU361125}

Sequence

Transcript Sequence

>Glyur000018s00003709.1
CTTTCCCTCTCTCTCTTCTTCTCATTGTTCTGTGTTTTTCTCTCTCTCTAACCTCTCTCGCTTTCTCGCTCTTATGAGCCCTAAGTTTTTACAGAACCGTTAGCCATGTCTCTGAGGAAGGTCTTCCGCTCTCGAAAATTCTCAAGATCCTTCAAGGAAGTGAGGGCCCTCGACGATTCCGCCGCCGGCGACCGGAGTGACGCCGCCGGCGAGGAATCGGAGGTCGGCAATGCGTGGTCCACCATGNTGCCGGAGATCCTCGGAGAGATCATTCGCCGAGTGGACGCCGCCGAGGAGCAGTGGCCGCACCGCCAAAACGTCGTCGCTTGCGCATGCGTTTGCAAGCGGTGGAGGGACACCACCCGCGAGATCGTACGGTCACCTTCGCATAACGGCAAAATCACTTTCCCTTCGTGCCTTAAACAGCCAGGACCACGCGACCTTCCCCACCAATGTCTTATAAAGCGGAATAAGAAGACCTCCACGTTTTACCTCTATCTTGCCCTTACACCATCATTCACAGATAAAGGGAAGTTTCTATTAGCAGCTAGGAGATATAGGTGTGGTACCCATACTGAGTATATAATATCAATCGATGCTGATGACTTATCACAAGGAAGTAATGCTTATGTTGGAAAGTTAAGCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCATAGTGGTGCCAAACCATCAAGTGGCAGGGCTAGCCGTCGTTTTGCTAGCAAACAGATAAGNCCTCAAGTTCCTGCAGGTAACTTTGAGTTGGGGCAGGTCTCCTACAAGTTCAACCTTTTGAAATCAAGAGGTCCAAGGAGGATGGTTTGCTCACTCAAGTCTTCTGTTTCGTCAGCGGGCGAAAGTTCAGACAGCATGTCTCCGGATGGCCATAAGATGCGTTCAGACAGCTTGCCTCTGGATGGCCNTAAGATGCANGGTAAAGAACATGCTGCTTCTGGCTACACAATCTTGAAGAATAAAGCTCCAAGATGGCATGAACATTTGCAGTGCTGGTGCTTGAACTTCCATGGTCGTGTGACAGTGGCATCAGTGAAGAACTTTCAGCTGGTTGCTACTGTGGACCAAAGCCAACCAGGAGGAAAAGGAGATGAAGAAACAGTTCTCCTCCAGTTTGGTAAAGTAGGGGATGATACTTTTACAATGGACTATAGGCAGCCCTTATCTGCCTTCCAGGCATTTGCCATTTGCTTAACTAGCTTTGGCACTAAACTGGCTTATCCACGTCACCTTCCCCACCAATGTCTTATAATGAGGAATAAGAAGACCTCCATGTTTTACCTCTATCTTGCCCTTACACCATCTAGGAGATATAGGTGTGCTACCCATACTGAGTACATAATATCAACCGATGCTGATGACTTATCACAAGGAAGCAATGCTTATGTTGGAAAGCTAAGATCGGATTTTCTTGGCACCAAGTTCACAATTTATGACAGCCAGCAGCCACCGCATAGTGNTGCCAAACCATCAAGTTGCAGGGGAAGCCGTTATTTTGCCAGCAACCAGATAAGCCCTCAAGTCTCCTACAAGTTCAACCTTTCAAAACCAAGACGTCCAAGGAGGATGGTTTGTTCACTCAAGTTGTCAGTCTCATCAGTTGGTGAAAGTTCAGAACATGCTGTTTCTGGCTACACAATATTGAAGAATAGACCCCCAAGATGGCATGAGCGTTTGCAGTGTTGGTGCTTGAACTTCCATGGTCGTGTGACAGTGGCATCAGTGAAGAACTTTCAGCTGCTTGCTACTGTGNACCAAAGCCAACAAGAAGGAAAAGGAGATGAAGAAACAGTTCTCCTTCACTTTGGTAAAGTAGGGGATGATACTTTTACCATGGACTATAGACAGCCCTTATCTGCCTTCCAGGCATTTGCCATTTGCTTAACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00018	171574	182789	-

Gene family

Gene family	subfamily
Transcription Factors Family	TUB
Ubiquitin Family	F-box
EAR motif-containing Proteins	TUB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000018s00003709.1	PF00646.28	F-box	44	91	5.10E-06
Glyur000018s00003709.1	PF01167.13	Tub	108	378	2.60E-86
Glyur000018s00003709.1	PF01167.13	Tub	385	606	2.10E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.415
SRR1783600	control	29.740
SRR1783602	moderate drought stress	26.964
SRR1811619	moderate drought stress	27.083

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	37.216
DRR006520	Root Summer glycyrrhizin high producing strain	37.162
DRR006521	Root Winter glycyrrhizin high producing strain	20.299
DRR006522	Root Winter glycyrrhizin high producing strain	20.226
DRR006523	Root Summer glycyrrhizin low producing strain	52.964
DRR006524	Root Summer glycyrrhizin low producing strain	52.405
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.588
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.384

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.807
SRR2868004	Drought Stress (root)	37.757
SRR2967015	Control (root)	40.206

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	41.585
SRR9715740	Leaf	30.104
SRR9715741	Leaf	43.685
SRR9715739	Root	56.784
SRR9715742	Root	53.094
SRR9715743	Root	51.855

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	43.863
SRR8749028	MeJA induced 9h	51.029
SRR8749029	MeJA induced 9h	41.004
SRR8749030	Uninduced	67.222
SRR8749031	Uninduced	21.246
SRR8749032	Uninduced	27.789

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.197
SRR8400027	Control - Root	45.011