Gene detail information of Glyur000018s00003706 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G10865.1 | 5.00E-15 | |
| NR | XP_010069543.1 | 2.17E-23 | PREDICTED: cytochrome c oxidase assembly factor 5 isoform X1 [Eucalyptus grandis] |
| trEMBL | tr|M0RFA5|M0RFA5_MUSAM | 2.00E-23 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P04280_001} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00018 | 166596 | 168357 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000018s00003706.1 | PF10203.4 | Pet191_N | 1 | 66 | 9.60E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 54.361 |
| SRR1783600 | control | 55.580 |
| SRR1783602 | moderate drought stress | 45.854 |
| SRR1811619 | moderate drought stress | 44.788 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 108.631 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 102.337 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 111.527 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 107.600 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 89.654 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 89.088 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 32.015 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 29.197 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 43.307 |
| SRR2868004 | Drought Stress (root) | 36.779 |
| SRR2967015 | Control (root) | 39.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.520 |
| SRR9715740 | Leaf | 19.807 |
| SRR9715741 | Leaf | 12.285 |
| SRR9715739 | Root | 3.271 |
| SRR9715742 | Root | 12.584 |
| SRR9715743 | Root | 12.861 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 32.175 |
| SRR8749028 | MeJA induced 9h | 21.620 |
| SRR8749029 | MeJA induced 9h | 30.322 |
| SRR8749030 | Uninduced | 17.341 |
| SRR8749031 | Uninduced | 7.855 |
| SRR8749032 | Uninduced | 8.705 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 47.808 |
| SRR8400027 | Control - Root | 41.033 |