Gene detail information of Glyur000018s00003704 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G28200.1 | 3.00E-51 | FH interacting protein 1 |
| NR | XP_003596360.1 | 4.21E-130 | GEM-like protein [Medicago truncatula] |
| Swissprot | tr|Q9SE96|GEML1_ARATH | 7.00E-65 | GEM-like protein 1 |
| trEMBL | tr|G7IH46|G7IH46_MEDTR | 2.00E-130 | Uncharacterized protein {ECO:0000313|EMBL:AFK48791.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00018 | 156363 | 159019 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000018s00003704.1 | PF02893.15 | GRAM | 113 | 189 | 3.30E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 55.173 |
| SRR1783600 | control | 55.271 |
| SRR1783602 | moderate drought stress | 78.843 |
| SRR1811619 | moderate drought stress | 78.565 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 113.531 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 112.610 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.983 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.040 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 52.032 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 51.691 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.728 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.698 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.166 |
| SRR2868004 | Drought Stress (root) | 7.127 |
| SRR2967015 | Control (root) | 9.959 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.177 |
| SRR9715740 | Leaf | 16.592 |
| SRR9715741 | Leaf | 9.152 |
| SRR9715739 | Root | 16.697 |
| SRR9715742 | Root | 25.881 |
| SRR9715743 | Root | 18.910 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.374 |
| SRR8749028 | MeJA induced 9h | 0.354 |
| SRR8749029 | MeJA induced 9h | 0.903 |
| SRR8749030 | Uninduced | 0.179 |
| SRR8749031 | Uninduced | 0.072 |
| SRR8749032 | Uninduced | 0.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 25.550 |
| SRR8400027 | Control - Root | 25.528 |