Gene detail

Gene detail information of Glyur000018s00003703.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14930.2	3.00E-176	Uroporphyrinogen decarboxylase
NR	XP_006592936.1	0	PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic-like isoform X3 [Glycine max]
COG	YP_005067117.1	1.00E-138	uroporphyrinogen III decarboxylase [Arthrospira platensis NIES-39]
Swissprot	tr\|Q93ZB6\|DCUP1_ARATH	0	Uroporphyrinogen decarboxylase 1, chloroplastic (Precursor)
trEMBL	tr\|I1LV68\|I1LV68_SOYBN	0	Uroporphyrinogen decarboxylase {ECO:0000256\|RuleBase:RU000554}

Sequence

Transcript Sequence

>Glyur000018s00003703.1
ATGGCTACTACTACTTCTTCCATTCACAGTGGTTTGGGATGGAAATCTTCCTCCTTGTTTCTACAATCTACTGCCTTCAACCTGTTTTCTCCACCTTTCAAACCAAAACCCCACCGCTCCAAGTTTTCTCTCACTTGCTCTGCCGCCTCTTCTTCCTCTGATCCACTCTTGGTTAAGGCTGCTAGGGGAGATCCTGTTAGCCNTCCTCCGGCGTGGATGATGCGCCAGGCGGGAAGGTACATGGCTGTTTACAGAAAGCTTGCTGAGAAACATCCATCCTTCCGAGAGAGGTCGGAGAAGACTGATCTCATTGTGGAAATTTCTTTGCAGCCTTGGAAAGCATTCAGGCCTGATGGAGTAATTATTTTCTCTGACATCCTTACACCGCTACCTGCATTTGGGATTGAATTTGACATCGAAGAAGTAAGGGGACCTGTTATACAGTCACCCATACGATCTGAGGAGGGATTAAAGGTTTTGCACCCAATTGACTTGGACAGGCTTAGATTTGTTGGAGAATCACTTAAGATACTACGCCAGGAGGTTGGTGGTCATGCTGCTGTTTTGGGTTTTGTGGGAGCACCTTGGACAATGGCAACATATATAGTGGAAGGGGGTACAACACGCACGTATACAACCATTAAGAGCATGTGCCATACAACACCTCACATATTGAGGACTCTGCTTTCTCATTTGACGCAGGCAATAGCAGATTACATCATTTTCCAAGTGGAATCTGGGGCTCACTGCATACAAATATTTGATTCGTGGGGTGGACAACTACCGCCTGATATGTGGGAACGCTGGTCAAAGCCTTATATCAAAGAGATTGTAAATTTGGTCAAGAAAAAATGCCCCGAGACACCAATTGTTCTTTATATAAACGGAAACGGTGGCCTTCTCGAGCGAATGGTAGATACTGGAGTTGATGTTATTGGGCTAGACTGGACAGTGGATATGGCAGATGGAAGAAGAAGATTGGGTAGCGGGATAGGTGTGCAGGGAAATGTGGACCCTGCCTACTTATTCTCTCCTCTTGCTGCTCTTACTGAAGAAATTCAGAGGGTTGTGAGGTGTGCGGGACCTAGGCGGCACATCCTTAATCTTGGTCATGGTGTTCTTGTTGGCACACCTGAAGAAGCTGTTGCACATTTCTTTGAAGTAACAAGGAGCTTGAAGTTTGACACACTCTTCCAAAATAACACTGCAAATGCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00018	155644	162540	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01599	hemE, UROD	EC:4.1.1.37	Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

biological_process
GO:0006779 porphyrin-containing compound biosynthetic process

molecular_function
GO:0004853 uroporphyrinogen decarboxylase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000018s00003703.1	PF01208.12	URO-D	55	391	1.20E-108

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.258
SRR1783600	control	10.369
SRR1783602	moderate drought stress	8.471
SRR1811619	moderate drought stress	7.495

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.850
DRR006520	Root Summer glycyrrhizin high producing strain	15.339
DRR006521	Root Winter glycyrrhizin high producing strain	7.715
DRR006522	Root Winter glycyrrhizin high producing strain	7.127
DRR006523	Root Summer glycyrrhizin low producing strain	11.585
DRR006524	Root Summer glycyrrhizin low producing strain	12.169
DRR006525	Leaf Summer glycyrrhizin high producing strain	31.170
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.438

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.073
SRR2868004	Drought Stress (root)	14.887
SRR2967015	Control (root)	14.675

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.164
SRR9715740	Leaf	43.380
SRR9715741	Leaf	34.541
SRR9715739	Root	8.270
SRR9715742	Root	9.293
SRR9715743	Root	8.899

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.494
SRR8749028	MeJA induced 9h	17.852
SRR8749029	MeJA induced 9h	7.402
SRR8749030	Uninduced	10.344
SRR8749031	Uninduced	3.401
SRR8749032	Uninduced	4.314

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.982
SRR8400027	Control - Root	22.503