Gene detail information of Glyur000018s00003701 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42610.2 | 9.00E-63 | Protein of unknown function (DUF640) |
| NR | XP_006592933.1 | 7.23E-105 | PREDICTED: uncharacterized protein LOC100806493 isoform X1 [Glycine max] |
| Swissprot | tr|Q9S7R3|LSH10_ARATH | 2.00E-79 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 |
| trEMBL | tr|K7LWG8|K7LWG8_SOYBN | 3.00E-105 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G35850.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00018 | 142271 | 142858 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000018s00003701.1 | PF04852.7 | DUF640 | 32 | 162 | 7.30E-64 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 141.081 |
| SRR1783600 | control | 142.912 |
| SRR1783602 | moderate drought stress | 111.601 |
| SRR1811619 | moderate drought stress | 111.393 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 550.884 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 538.113 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 23.298 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 22.763 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 391.364 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 387.857 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.297 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.390 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 22.982 |
| SRR2868004 | Drought Stress (root) | 23.225 |
| SRR2967015 | Control (root) | 29.121 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.408 |
| SRR9715740 | Leaf | 6.282 |
| SRR9715741 | Leaf | 2.913 |
| SRR9715739 | Root | 115.085 |
| SRR9715742 | Root | 83.472 |
| SRR9715743 | Root | 87.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.228 |
| SRR8749028 | MeJA induced 9h | 1.036 |
| SRR8749029 | MeJA induced 9h | 0.414 |
| SRR8749030 | Uninduced | 5.531 |
| SRR8749031 | Uninduced | 0.130 |
| SRR8749032 | Uninduced | 3.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 138.220 |
| SRR8400027 | Control - Root | 142.747 |