Gene detail

Gene detail information of Glyur000018s00003696

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G78860.1	5.00E-117	D-mannose binding lectin protein with Apple-like carbohydrate-binding domain
NR	XP_003543212.1	0	PREDICTED: epidermis-specific secreted glycoprotein EP1-like [Glycine max]
Swissprot	tr\|Q39688\|EP1G_DAUCA	5.00E-134	Epidermis-specific secreted glycoprotein EP1 (Precursor)
trEMBL	tr\|I1M307\|I1M307_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G34520.1}

Sequence

Transcript Sequence

>Glyur000018s00003696.1
ATGGCTTCTTCAGTGCCTCACCCCAAATCCTCCCTTCTTATTACAANATTGTCCCTATCGTTCTTCACCTTCATTGCCCATGCCGTTGTTCCTCAAAACGAAACCTTCAAATTCGTAAACTCAGGTGAACTNGGACCCTTCATTGTGGAATATGACGCTTCTTACAGAATGATAAGCATCTTCAACTCCCCATTCCAAGTTGGTTTCTACAACACCACCCCAAACGCCTACACGCTAGCGCTGCGCGTGGGGCTCCAACGCTCAGAACAGCTTTTCCGTTGGGTGTGGGAAGCCAATAGGGGAAACCCAGTTAAGGAAAACGCAACCTTTTCCCTTGGTTCCGATGGGAACCTCGTTTTAGCTGATTCCGATGGAAGANTCGCTTGGCAAACAAACACTACCAACAAGGATGTTGTAGCCTTCAGGTTACTCCCAAATGGTAACATGGTGCTACTTGATTCCAAGGGTAACTTTGTTTGGNAGAGTTTTGACCACCCTACAGATACCCTTTTAGTGGGCCAGTATCTAAGAGCTAATGGGCCTTCAAAACTTGTTAGTAGGCTCTCAGAGAGGGAGAATGTTAATGGGCCTTACAGTTTGGTTTTGGAGCCCAAAGGTTTGGACTTGTACTATAAGAGCAAGAATTCCCCTAGGCCAATTCTCTATTCAAAATTGATCACCATTGATCAAAATGGCTCATTGGAGAATGTCACATTCATATCTGATCCAGAGAGTTTTGAGCTCAATCTTGATTTCTCTGTTTCCAATCCTTCTTCCTCTGGCTCTAGATTTCTTGGTAGGCCTGTGAACAATAGCACCTTGACATATCTTAGGCTTGGGANTGATGGTAACATTAAAATGCACACTTACTTCCTAGATGTTCGTTCTGGTGTTTGGCAAGTGACTTACACACACTTTGATAGAGATTCTGATGAGAGTGAGTGCCAATTGCCAGAGAGGTGTGGGAAACTTGGGATTTGTGAGGATAACCAATGTGTTGGTTGTCCATTGGAGAATGGGGTATTTGGGTGGAGCAAGAATTGCAGTGCTAAGGCTGTGACATCATGCAAGGCAAGTGAGTTCCACTACTACAAAGTTGAAGGGGTTGAGCATTACATGAGCAAATACACTAGTGGGGAAAGAGTGAGTGAGGCTAACTGTGGAGACAAATGTACCAAGGATTGCAAGTGTGTGGGGTATTTCTACCACAGAGATAACTCAAGGTGTTGGGTTGCTTATGATCTTCAGACACTTACTAGAGTGCCAAATTCCACACATGTGGGTTTTATCAAGGTGCCTAATCAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00018	121970	123277	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000018s00003696.1	PF01453.19	B_lectin	93	189	1.20E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.928
SRR1783600	control	9.972
SRR1783602	moderate drought stress	21.380
SRR1811619	moderate drought stress	21.022

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.967
DRR006520	Root Summer glycyrrhizin high producing strain	20.724
DRR006521	Root Winter glycyrrhizin high producing strain	395.174
DRR006522	Root Winter glycyrrhizin high producing strain	385.957
DRR006523	Root Summer glycyrrhizin low producing strain	34.611
DRR006524	Root Summer glycyrrhizin low producing strain	34.981
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.806
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.713

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	138.050
SRR2868004	Drought Stress (root)	212.158
SRR2967015	Control (root)	181.987

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	159.005
SRR9715740	Leaf	22.383
SRR9715741	Leaf	197.213
SRR9715739	Root	29.396
SRR9715742	Root	17.933
SRR9715743	Root	20.828

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1062.951
SRR8749028	MeJA induced 9h	2500.736
SRR8749029	MeJA induced 9h	1805.419
SRR8749030	Uninduced	7238.760
SRR8749031	Uninduced	13070.472
SRR8749032	Uninduced	5296.733

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	73.102
SRR8400027	Control - Root	61.771