Gene detail

Gene detail information of Glyur000018s00003691

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G50940.1	6.00E-122	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_004289117.1	0	PREDICTED: uncharacterized protein LOC101307344 [Fragaria vesca subsp. vesca]
COG	YP_007098995.1	8.00E-30	AAA+ family ATPase [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|O49813\|OLEE1_BETPN	8.00E-31	Olee1-like protein (Precursor)
trEMBL	tr\|G7IH73\|G7IH73_MEDTR	0	P-loop nucleoside triphosphate hydrolase superfamily protein {ECO:0000313\|EMBL:AES66638.1}

Sequence

Transcript Sequence

>Glyur000018s00003691.1
ATGTCCAATAGCAAGTCACTTCTTTCTGCTGTGGCCTCTCTTGCAGCCTCAGCTATGCTAATTCGAAGCATTGCTAATGAATTCATTCCTCGCGAAGTCCTAAACTTCTTTCACTCGGGACTTGGTAACCTTTCTCGTCAATTCTCGACTCAATTCACCATTGTCATTGAACAATTCCAAGGGATGTCTAGAAACCAAGTTTTTGAGGCTGCAGAAGCCTATTTGGGTACCAAAGCCACTCTCTCAGCTCAAAGACTCACAGCAAGCAAATCCGAGGATGATAAAAAGCTATCATTCAGTGTAGATAGAGATGAAGAAATGAGTGATGATTTTGAAGGGATTCAAGTAAAGTGGAGACTAACTTGTATTCAAGTTGAATCATCTCGTGGTATGAATTCCTCTTCAGTGTCTGAGTTAAGATCCTATGAGCTAAGCTTTCACAAGAAACACAAGGATAAGATCTTCAATTNCTATTTGCCATATGTGATGGAGAGAGCCAAGGCAATCAAACAAGAGAACAAAACACTAAAGATTTACACGGTTGGACATGGTTGGTGTGCACAAGCTCCCAACTTTAACCACCCCATGACTTTCAANACCCTTGCAATTGATGCAGAGCTTAAAAGGAAACTGGTGAATGATTTGGACATGTTTGTAAAAGGGAAGGAGTTCTACAAGAGAACTGGGAAAGCTTGGAAACNTGGTTACCTGTTGTATGGCCCTCCTGGCACTGGAAAGTCTAGTTTGATTGCAGCCATGGCCAACTATCTCAACTATGATATCTATGACTTGGATCTCACTGCTATATATGACAATGTGGAGCTAAAGAATATGCTTCTTGCCATGTCCAACCGTTCCATACTTGTGCTTGAGGATATTGACTGCACTATAAACCTCCAGAACCGAGAAGAGGANGAGGAAGTGGTTACTAATGGTCACAATAAGGTGACACTTTCAGGACTCTTGAATGTTATAGATGGTCTTTGGTCTTGCTGTGGAGAGGAGCGCATCATTATTTTCACAACCAATCACAAGGAAAGACTTGATCCTGCTCTGCTAAGGCCTGGTCGAATGGACATGCAAATTCACTTGTCATATTGCACCTTTTCTGCTTTTGAGCAATTGGCCANCAACTACATTGGCATTTCTCAACACAAACTTTTCGAACAGATTGAAGGGCTTTTAAGACAAGTCCAAGTGACTCCAGCAGAAGTTGCTGGGGAGCTAACAAGGATTGCTGATGCTAGAGAATGTCTACAAGGCCTTGTCAAATTCCTCCACATTAAAAANATGCTCAAGGGCGAGACTATAACTGAACACAATATCGAAGAAGATTTCAAGGTCGAGAGTACTAAAATTATGTCGGATGGCAAGTCACTTTTTTCTGCTCTGGCCTCNCTTGCAACCTCTGTCTTGCTGATTCGAAGCATTTCCAATGAACTCATTCCTCGTGAAGTCCTAAACTTTTTTCACATGGGACTTGGTAATCTTTCTCGCAAATGCTCAACCCAATTCACCATTGTCATTGACCAATTCCAAGGCATGTCTAAAAACCAAGTTTTTGAGGCTGCAGAGGCCTATCTGTGCACCAAAGCCACTCTCTCAGTTCAAAGAATCACAGCAAGCAAATTTGAGGATGATAAGAACTTATCATTCAATGTAGATAAAGATGAAGAAGTGAGTGATGATTTTGAAGGGGTTCGAGTAAAGTGGAGACTAACTTGTATTCAAGTTGAATCATCCCGTGTTATGAATGGAGTGTCAGAATTAAGGACCTATGAGCTAAGCTTTCACAAGAAACACAAGGATAAGATCCTGAATTCCTATTTGCCATATGTGATGGAAAGAGCCAAGACTATCAAACAAGAGAACAAGAAACTGAAGATTCAAACTGCTGAACGTGGCTGGTGTGAACAAGCTCCCAACTTTAACCACCCCATGACTTTCAACACCCTTGCAATTGATGCAGAGCTTAAAAGGGAATTGGTGAGTGATTTGGACAGCTTTGTGAAGGGGAAGGAGTTTTACAAGAGAACTGGGAAAGCTTGGAAACGTGGTTACCTATTGTATGGCCCTCCTGGCACTGGAAAGTCTAGTTTGATTGCAGCCATGGCCAACTATCTCAACTATGATATCTATGACTTGGATCTCACTGTCCTACATNACAACAGGGGCTTAAGGGATATTCTTCTTGGCATGTCCAACCGTTCCATACTTGTGATTGAGGATATTGACTGCTCTATAAAACTACAAAATCGAGAAGAGGATGAGGAAGTGGTTAGTAATGGATACAATAAGGTGACACTTTCAGGACTCTTGAATGTTATAGATGGTCTTTGGTCATGCTGTGGAGAGGAACGCATCATTGTTTTCACAACCAATCACAAGGAAAGGCTTGATCCTGCTCTGCTAAGGCCTGGTCGAATGGACGTGCAAATTCACTTAGCTTCTAAGGAAGTCCAAGTGACTCCAGCAGAAGTTGCAGGGGAGCTAACAAAGATCGCTGATGCTAGAGAATGCCTACAAGACCTTGTCAAATTCCTTCACATCAAGAAAATGCTCAAGGGCGAGACTATAAGTAAACACAATATCGAAGAAGCACCAAAGGATGAGAAATTCTCCGTTGTCGGCATGATTTACTGTGATCCTTGCCGCTTTCAATTTGAGTCAAGGCTTAGCCACCCCATTGAAGGTATTAAGGTGACTTTGGAATGCAGAAAGGAGGATAATAATAAAAATGTGACATACGTGAAGGAGGGTCGCACCGACAAAAATGGCATCTACAATATTCCGGTTGATGGTGATCATGAGGATGAGATCTGTGAGGTGAATGCTGAGGCAAGTGGTAAAGGCAAATGCACTGAGGCCATGGCAAGCGATTCTGATAGGATTGTTCTCACAGACAACATGGGTGCCTCTTCCTTGATTCGCTATGTTAATCCCCTTGGGTTCATGACTAAGGCAGTTGATAGCCAATGTCCAAAAGTTTTCAAGGAGTTGGGTTTGGACAAGCTTGATGACTAA

Protein Sequence

>Glyur000018s00003691.1
MSNSKSLLSAVASLAASAMLIRSIANEFIPREVLNFFHSGLGNLSRQFSTQFTIVIEQFQGMSRNQVFEAAEAYLGTKATLSAQRLTASKSEDDKKLSFSVDRDEEMSDDFEGIQVKWRLTCIQVESSRGMNSSSVSELRSYELSFHKKHKDKIFNXYLPYVMERAKAIKQENKTLKIYTVGHGWCAQAPNFNHPMTFXTLAIDAELKRKLVNDLDMFVKGKEFYKRTGKAWKXGYLLYGPPGTGKSSLIAAMANYLNYDIYDLDLTAIYDNVELKNMLLAMSNRSILVLEDIDCTINLQNREEXEEVVTNGHNKVTLSGLLNVIDGLWSCCGEERIIIFTTNHKERLDPALLRPGRMDMQIHLSYCTFSAFEQLAXNYIGISQHKLFEQIEGLLRQVQVTPAEVAGELTRIADARECLQGLVKFLHIKXMLKGETITEHNIEEDFKVESTKIMSDGKSLFSALASLATSVLLIRSISNELIPREVLNFFHMGLGNLSRKCSTQFTIVIDQFQGMSKNQVFEAAEAYLCTKATLSVQRITASKFEDDKNLSFNVDKDEEVSDDFEGVRVKWRLTCIQVESSRVMNGVSELRTYELSFHKKHKDKILNSYLPYVMERAKTIKQENKKLKIQTAERGWCEQAPNFNHPMTFNTLAIDAELKRELVSDLDSFVKGKEFYKRTGKAWKRGYLLYGPPGTGKSSLIAAMANYLNYDIYDLDLTVLHXNRGLRDILLGMSNRSILVIEDIDCSIKLQNREEDEEVVSNGYNKVTLSGLLNVIDGLWSCCGEERIIVFTTNHKERLDPALLRPGRMDVQIHLASKEVQVTPAEVAGELTKIADARECLQDLVKFLHIKKMLKGETISKHNIEEAPKDEKFSVVGMIYCDPCRFQFESRLSHPIEGIKVTLECRKEDNNKNVTYVKEGRTDKNGIYNIPVDGDHEDEICEVNAEASGKGKCTEAMASDSDRIVLTDNMGASSLIRYVNPLGFMTKAVDSQCPKVFKELGLDKLDD

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00018	77074	91945	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000018s00003691.1	PF14363.1	AAA_assoc	28	122	2.50E-23
Glyur000018s00003691.1	PF00004.24	AAA	237	365	1.30E-16
Glyur000018s00003691.1	PF14363.1	AAA_assoc	481	575	6.60E-20
Glyur000018s00003691.1	PF00004.24	AAA	688	815	1.20E-16
Glyur000018s00003691.1	PF01190.12	Pollen_Ole_e_I	875	958	2.70E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.001
SRR1783602	moderate drought stress	0.019
SRR1811619	moderate drought stress	0.011

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.071
DRR006520	Root Summer glycyrrhizin high producing strain	0.071
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.484
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.490

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.105
SRR2868004	Drought Stress (root)	0.165
SRR2967015	Control (root)	0.131

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.007
SRR9715740	Leaf	0.121
SRR9715741	Leaf	1.425
SRR9715739	Root	0.131
SRR9715742	Root	0.705
SRR9715743	Root	0.485

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.680
SRR8749028	MeJA induced 9h	15.352
SRR8749029	MeJA induced 9h	10.956
SRR8749030	Uninduced	14.465
SRR8749031	Uninduced	15.244
SRR8749032	Uninduced	9.813

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.333
SRR8400027	Control - Root	0.215