Gene detail

Gene detail information of Glyur000018s00003688

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G42580.1	9.00E-173	tetratricopetide-repeat thioredoxin-like 3
NR	XP_004489036.1	0	PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Cicer arietinum]
COG	YP_004384202.1	1.00E-21	TPR-repeat-containing protein [Methanosaeta concilii GP6]
Swissprot	tr\|Q9MAH1\|TTL1_ARATH	0	TPR repeat-containing thioredoxin TTL1
trEMBL	tr\|A0A072V9X4\|A0A072V9X4_MEDTR	0	TPR repeat thioredoxin TTL1-like protein {ECO:0000313\|EMBL:KEH38622.1}

Sequence

Transcript Sequence

>Glyur000018s00003688.1
GAAGAGGCGAGAGAGAGAGAGAGAGAGAGGTAAACTAAAATCTGTCTCGTGAAACAGCAGGTGAAGGAGGAGGAAAAAGAAAATAAAAGCTCACTCTTTTTCTCCATCCTTCTTCTTCCTTCCTCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAATAAGCACACTGAAAAATAAAATACTAAAACCCCATTCACTCTCTATCTCTCTCTAAAAAGCAAGCTTTTATTTCCTTCTCTCTTTCTCTCTCTAAAGTATTCCAACAACACTCACATTCNTTCTTTACTTGCTCATTTTATATCACGAGATCCCCATCTCTTTCTCTCTTTCCTTTCTTCTTCTTCTCCTTCTCTCTCCTTTCCTTCTTCTTCTTCTTCATGTCCTCTTCAACAGAGTTTCCCAACCCATGTTTTTCTACTAGCTGTAGCTCCATTCAAAGGCATTGCTGACACACACACACAGAACGAGTGTGTGTGTGTGTGAGAGAGAGAGTGTGAGATAGATAGAGAAAGTGAAAAGGGGGTGGTTTAGCTTCACCGAAAGATTGAATTTTTGAGATACCATTTTTGTTTGGCTACCTAGAAAATGTCGCATTCGTCGGAAAAGCCAGTATCCGAGGTTGTCGGGTTAGACCACTTCGCCGATCGGTTCAAGGACACGCTGAGCTTCGAGGCAAACAAGCCAGACTTCAGAGAACTCGATCTGGGTTCACCCGTTTCGCCATTGCGGACACGTGGACCCGCTGCTAGTAGCAGTTCCGGTTCTTCTGGATCCTTCTCTGGTGGACGAAACGGGTGTAACCCGGTTCCCAAAAGATCCGATTCAACACCCAACAACAACAACTCCGGCGAGCTCTCTGGCTCCAGCGAGAACAGCCCCACCGCCGACAGATCCGCCCTGGGATCCAAACCGGGTCACGTGAGATCCGATTCCGGATCCGCACCGACGNCGTTGATATACTCGGGTCAAACAGTGAACTCGCCGGCGCTTAATGTTCTCCCCACCGGAAACATATGCCCCTCCGGCAGGATCGTCAAGACTGGCATGGCGGCGAACCGTGGCTCCAGAAGCGACGTTCTCGGCTCCGGCATGGGGAACTACGGCCACGGAAGCATAATGCGCGGTGGCGCCGCCGTTGCCGCCGCCACCGCCAAGGGAGAGACCCACAGCAATACGAGGTGCGGCATTGGTAGTGATTTGGGGAAAAGAGGGGTGCAGAGTGTGGATCCAGAAGAGCTCAAGAGAGCTGGGAATGAGCATTACAAAAAGGGTCATTTTGCAGATGCATTGAGCCTCTATGACCGTGCAATTGCCCTTTCACCCGCCAGTGCCGCCTACCGGAGTAACCGCGCCGCGGCGCTGACCGGATTGGGGCGGCTCGCGGAGGCAGTGAGGGAATGTGAGGAGGCTGTGAGGTTGGATCCTAATTATGGCAGGGCTCATCAGCGTTTGGCTTCTCTTTTCCTCAGGTTAGGACAAGTTGAGAATGCTAGGAAGCACCTTTGTTATCCTGGGATGCAGCAGGATCCGTCTGAGATGCAGAAGTTGCAAATGGTGGAAAAGCATATCAGCAAATGTGCAGATGTGAGGAGGATAGGGGATTGGAAAAGTGTGCTTAGGGAAGTTGATGCTGGTGTTGCTGCTGGAGCAGACTCTTCCCCTCAGCTCTTTATGTGTAGAGCAGAAGCCCTTTTGAAACTCCATCAAATTGATGATGCGGAATCGATTTTTTCACATGTTCCCAAATCGGAGCCGCGTGCTAATTCCTCTTCTCAAGNGAGATTTTTTGGGATGCTTTCTGAAGCTTATTCCTACTTTGTCAGAGCTCAGATTGAGATGGCATTGGGAAGGTTTGAGANTGCAGTCACAGCTGCTGAGAAAGCTAGCCAGATTGATTCGCGAAATGTTGAAGTTGCTGTCTTGCTCAACAATGTAAGGATGGTGGCAAGAGCTCGAGTTCGTGGCAATGATCTTTTTAAATCCGAAAGGTTCACTGAAGCTTGCTCAGCATATGGGGAAGGTTTGAGACTGGACCCTTCAAATTCTGTTCTATATTGCAATAGAGCCGCATGCTGGTTTAAGCTTGGTCGGTGGGAAAGATCGATTGAAGACTCCAACCAAGCTTTACACATCCAGCCNAATTACACAAAGGCCCTTCTTCGAAGGGCTGCATCAAACAGCAAGCTAGAAAGATGGGAAGAAGCAGTCAAAGATTATGAGGTCTTGCGGAAAGAACTTCCACATGACAATGAAGTTGCTGAAGCTCTTTTTCATGCACAAGTGGCACTAAAGAAATCACGTGGGGAAGAAGTATATAATTTAAAGTTTGGTGGTGAGGTGGAAGAAGTATCAGGTCTTGAGCAGTTTAGAGCTGCAATATCCTTACCAGGTGTTTCCGTTGTCCATTTTGAAGTTGCATCTAACTCACAATGNAAGCAAATATCACCATTTGTGGATGTACTATGTGGTCGATATCCATCTATAAACTTCCTCAAGGTGGACATTCAAGAAAACCCAACAGTTGCAACTGCGGAGAACGTTAGGATTGTACCGACCTTCAAGATATACAAAAACGGAAGCCGAGTGAAGGAAATCGTATGCCCTAGTCTCGACATGTTGGAACACTCTGTGAGGCATTACAGCTTTTAGGACTTATGATTTGTAATGCCTTCCCTGTTGTCTTATCACTTNTGCATTTTCTTCTCCACCGCCCCGAAACCACCAGTTAAACTCTCTAGTCTCTACAGTTCTTCCAGTCCTTTGATCGATCCCACCCTCATAAAATGATCACCACCTGATACCTGTGACATAGTCAAAACCAGACAATAATCTTGTTAGCATGCAAAATGCCATTGGAACCTTAGAGATAGTCCAGTCCAGTTCCGTTTGGAGTTTTTATTTATTCATTCATTCCCCATTGCTCTTTGGTTCCATTTTCCTCCCAAACCTCCCTTTGTCAATTTTCTTTCTTTTTTTTCTCTACNCCTTTTTCAGTTCACTAGGTCAGCTGTTCTTGTATCCCCAGTTTCTTTAAGGTTAAAAGGAGAAAAAAAAATGTTTTTATGTCTGTACAATTGATTTAATTATCAGTTTAAATTACCTTTTTTTAAGATAGAAAATATAGATAGAGATATAGACAGAAGGGAAGGGAGGGGAGGGTGTTCTTCTAGTTAAGAGGGGGGATCTGTACATGTATATATGTGATGATATTATATATATACGAGACACTGGAAGCCTTTTGAGGGGAGATAGGTTGAGTGGTGGGTGGGTAGTACCTACTGAGNTAGCAAAAGGAGGATGAAAATGTTATTATTGTTTCTGTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00018	63072	67238	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0045454 cell redox homeostasis

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000018s00003688.1	PF13414.1	TPR_11	215	275	1.20E-13
Glyur000018s00003688.1	PF07719.12	TPR_2	407	439	0.01
Glyur000018s00003688.1	PF13414.1	TPR_11	456	518	9.50E-16
Glyur000018s00003688.1	PF00085.15	Thioredoxin	605	680	4.00E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	43.953
SRR1783600	control	43.987
SRR1783602	moderate drought stress	31.136
SRR1811619	moderate drought stress	30.949

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.795
DRR006520	Root Summer glycyrrhizin high producing strain	29.538
DRR006521	Root Winter glycyrrhizin high producing strain	7.097
DRR006522	Root Winter glycyrrhizin high producing strain	7.093
DRR006523	Root Summer glycyrrhizin low producing strain	17.870
DRR006524	Root Summer glycyrrhizin low producing strain	17.653
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.032
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.984

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.118
SRR2868004	Drought Stress (root)	21.661
SRR2967015	Control (root)	20.042

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.312
SRR9715740	Leaf	8.982
SRR9715741	Leaf	6.444
SRR9715739	Root	23.479
SRR9715742	Root	26.415
SRR9715743	Root	24.101

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.357
SRR8749028	MeJA induced 9h	21.704
SRR8749029	MeJA induced 9h	13.939
SRR8749030	Uninduced	3.031
SRR8749031	Uninduced	0.712
SRR8749032	Uninduced	1.529

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	53.940
SRR8400027	Control - Root	56.876