Gene detail

Gene detail information of Glyur000018s00003680.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G16670.1	2.00E-128	Protein kinase superfamily protein
NR	XP_006592542.1	0	PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840-like isoform X2 [Glycine max]
COG	YP_001958461.1	3.00E-25	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|C0LGH3\|Y5614_ARATH	2.00E-103	Probable LRR receptor-like serine/threonine-protein kinase At1g56140 (Precursor)
trEMBL	tr\|K7LUT8\|K7LUT8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G18950.2}

Sequence

Transcript Sequence

>Glyur000018s00003680.1
CAGAAGTTCCTAGCTTCCTGCTGCAACTGTTGCTGTTGAAAATTGTGAGGTTATTCGCTATTCAATCAGGGCTTAATGTGTTGTTTCTTCCACCACATGATCCCATGATCCCAGTTGTGAGTGCTATCAATTTCTGTGTTCAGATGATAACTAGTTGATGCTGTGGATGGTTTGTTCTCTTGGAGCACTAGAGTTACTTACTCTCTGATGAATTGTTTGTCCCTTATTTTCTGCAAAAGGGGCTCTACCTCAGCCACACAATCAACCCAAACTGATATAGATATTTCAAAAATTCAGAATGTCAATCTTTACACTTACAAGGAATTGCAAATTGCAACACAAGGTTTCAGTCCAGCAAAAAAGATAGGGGAGGGAGGTTTTGGATCAGTCTATAAGGGAAAGCTTAGAAATGGTACTCTTGCTGCTATAAAGGTTTTGTCAGCTGAATCAAGACAAGGCGTCCNTGAGTTCCTAACAGAAATCAAGGTGATCACTAGTGTAGAGCATGAGAATTTAGTTAAGTTGTACGGATGCTGTGTGCAAGGAAACCACAGGATTTTGGNATACGGCTATCTTGAGAATAACAGCTTAGCACAAACACTTCTTGGTGGAGGCCATAGTAGCATCCAATTCAGTTGGCATGTCCGGCGGAACATCTGCATTGGTGTTGCTCGGGGCCTTGCATTCCTTCACCATGAAGTGCAGCCACATATTATTCACAGAGACATTAAAGCAAGCAATATATTACTTGACAAAGACCTCCAGCCCAAAATCTCAGATTTTGGACTTGCAAAGCTTATTTCACCAGACCTGACCCATCTTAGTACNCTTGTCGCTGGTACAATTGGCTATCTGGCCCCTGAATATGCAATACGAAATCAGGTGACAAGAAAATGCGATGTCTATAGTTTTGGAGTTTTACTACTAGAAATTGTTAGTGGAAAGTGTAATACAAACAGACGTTTACCTGTTAAAGAACGGTATCTTCATACAAGGGCATGGGATTTGTATGAAAAGGGAGAGCTGGAGAGTTTGGTAGATGTCTTGCTAGACAGAGACTTCAATGTTGAGGAGGCAATAAGGTTTTGTAAGATTGGTCTTCTTTGCATTCAGGATTCTCTTCAGCTCCGACCTTCGATGTCTACCGTGCTTGATATGCTGATAGGTGAAACAGATGTGAATGAGGAGATGATGACAAAACCTGGCTTGATATTTGATTCTGTGGAAGCCAAAGACCAAGGGANACAGAAAGGCAAGGCTGAAGTAGAACAAACCTCTTCTTTGAACCAAGATGATTCATCTTTATCAGGAACCACCAGTTCTTTGGCTACCATGACATTCACTTCAATTTATGACCGAAGCAATTGAGTTGCCTATTGTTTGTAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00018	7695	10958	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.7.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000018s00003680.1	PF00069.20	Pkinase	50	252	7.10E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.684
SRR1783600	control	7.850
SRR1783602	moderate drought stress	8.025
SRR1811619	moderate drought stress	7.837

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.542
DRR006520	Root Summer glycyrrhizin high producing strain	9.445
DRR006521	Root Winter glycyrrhizin high producing strain	6.642
DRR006522	Root Winter glycyrrhizin high producing strain	6.814
DRR006523	Root Summer glycyrrhizin low producing strain	12.030
DRR006524	Root Summer glycyrrhizin low producing strain	12.091
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.325
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.432

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.951
SRR2868004	Drought Stress (root)	38.613
SRR2967015	Control (root)	36.192

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.896
SRR9715740	Leaf	2.590
SRR9715741	Leaf	2.116
SRR9715739	Root	1.729
SRR9715742	Root	2.207
SRR9715743	Root	2.309

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.423
SRR8749028	MeJA induced 9h	22.052
SRR8749029	MeJA induced 9h	12.241
SRR8749030	Uninduced	34.280
SRR8749031	Uninduced	10.911
SRR8749032	Uninduced	11.212

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.468
SRR8400027	Control - Root	6.339