Gene detail information of Glyur000018s00003679 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G53270.1 | 0 | ABC-2 type transporter family protein |
| NR | KEH38631.1 | 0 | white-brown-complex ABC transporter family protein [Medicago truncatula] |
| COG | YP_006435207.1 | 4.00E-33 | multidrug ABC transporter ATPase [Flexibacter litoralis DSM 6794] |
| Swissprot | tr|Q9MAH4|AB10G_ARATH | 0 | ABC transporter G family member 10 |
| trEMBL | tr|A0A072VAI6|A0A072VAI6_MEDTR | 0 | White-brown-complex ABC transporter family protein {ECO:0000313|EMBL:KEH38631.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00018 | 5294 | 7147 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000018s00003679.1 | PF00005.22 | ABC_tran | 51 | 204 | 1.00E-26 |
| Glyur000018s00003679.1 | PF01061.19 | ABC2_membrane | 339 | 550 | 7.00E-43 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.939 |
| SRR1783600 | control | 0.983 |
| SRR1783602 | moderate drought stress | 1.460 |
| SRR1811619 | moderate drought stress | 1.468 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.059 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.058 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.354 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.171 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.237 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.225 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.050 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.179 |
| SRR2868004 | Drought Stress (root) | 3.568 |
| SRR2967015 | Control (root) | 2.208 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.108 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.221 |
| SRR9715739 | Root | 1.853 |
| SRR9715742 | Root | 0.604 |
| SRR9715743 | Root | 1.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.023 |
| SRR8749028 | MeJA induced 9h | 0.069 |
| SRR8749029 | MeJA induced 9h | 0.153 |
| SRR8749030 | Uninduced | 0.136 |
| SRR8749031 | Uninduced | 0.558 |
| SRR8749032 | Uninduced | 0.337 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.789 |
| SRR8400027 | Control - Root | 9.358 |