Gene detail information of Glyur000017s00002476 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38580.1 | 1.00E-23 | farnesylated protein 6 |
| NR | XP_003537715.1 | 8.70E-43 | PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Glycine max] |
| Swissprot | tr|Q9SZN7|HIP26_ARATH | 5.00E-32 | Heavy metal-associated isoprenylated plant protein 26 (Precursor) |
| trEMBL | tr|I1LIH1|I1LIH1_SOYBN | 3.00E-43 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G09690.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00017 | 614420 | 615098 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000017s00002476.1 | PF00403.21 | HMA | 27 | 81 | 1.20E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.088 |
| SRR1783600 | control | 0.178 |
| SRR1783602 | moderate drought stress | 1.320 |
| SRR1811619 | moderate drought stress | 1.436 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.342 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.995 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.445 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.387 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.732 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.201 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.910 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.765 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.721 |
| SRR2868004 | Drought Stress (root) | 2.023 |
| SRR2967015 | Control (root) | 7.484 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.860 |
| SRR9715740 | Leaf | 0.788 |
| SRR9715741 | Leaf | 0.379 |
| SRR9715739 | Root | 4.777 |
| SRR9715742 | Root | 7.525 |
| SRR9715743 | Root | 2.669 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.501 |
| SRR8749028 | MeJA induced 9h | 1.069 |
| SRR8749029 | MeJA induced 9h | 1.361 |
| SRR8749030 | Uninduced | 1.481 |
| SRR8749031 | Uninduced | 0.201 |
| SRR8749032 | Uninduced | 1.113 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.275 |
| SRR8400027 | Control - Root | 0.519 |