Gene detail information of Glyur000017s00002467 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G34830.1 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_004505826.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Cicer arietinum] |
| Swissprot | tr|Q0WLC6|PP349_ARATH | 0 | Pentatricopeptide repeat-containing protein MRL1, chloroplastic (Precursor) |
| trEMBL | tr|K7LSU9|K7LSU9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G03760.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00017 | 562783 | 573262 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000017s00002467.1 | PF13812.1 | PPR_3 | 491 | 523 | 0.15 |
| Glyur000017s00002467.1 | PF13041.1 | PPR_2 | 527 | 572 | 3.10E-13 |
| Glyur000017s00002467.1 | PF13041.1 | PPR_2 | 593 | 643 | 1.00E-09 |
| Glyur000017s00002467.1 | PF01535.15 | PPR | 669 | 698 | 0.00029 |
| Glyur000017s00002467.1 | PF01535.15 | PPR | 739 | 765 | 0.00021 |
| Glyur000017s00002467.1 | PF13041.1 | PPR_2 | 772 | 814 | 1.70E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.593 |
| SRR1783600 | control | 4.601 |
| SRR1783602 | moderate drought stress | 4.791 |
| SRR1811619 | moderate drought stress | 4.695 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.371 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.346 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.073 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.038 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.215 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.204 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 39.959 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 39.637 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.964 |
| SRR2868004 | Drought Stress (root) | 9.090 |
| SRR2967015 | Control (root) | 8.978 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 41.714 |
| SRR9715740 | Leaf | 56.574 |
| SRR9715741 | Leaf | 36.161 |
| SRR9715739 | Root | 0.774 |
| SRR9715742 | Root | 4.199 |
| SRR9715743 | Root | 3.524 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.267 |
| SRR8749028 | MeJA induced 9h | 5.888 |
| SRR8749029 | MeJA induced 9h | 4.287 |
| SRR8749030 | Uninduced | 2.377 |
| SRR8749031 | Uninduced | 3.396 |
| SRR8749032 | Uninduced | 3.645 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.574 |
| SRR8400027 | Control - Root | 7.987 |